leilahsn / FastKnockLinks
☆10Updated 2 years ago
Alternatives and similar repositories for FastKnock
Users that are interested in FastKnock are comparing it to the libraries listed below
Sorting:
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 2 weeks ago
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last month
- A container for all enzyme constrained models created by GECKO.☆15Updated 3 years ago
- memote – the genome-scale metabolic model test suite☆143Updated 4 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated last month
- Python package for building and analyzing models using ModelSEED☆24Updated 8 months ago
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆64Updated 3 weeks ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆42Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆170Updated last year
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆42Updated 5 months ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16Updated 2 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆25Updated 3 years ago
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method☆15Updated 10 months ago
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…☆60Updated 2 weeks ago
- The BiGG Models website server☆86Updated 6 years ago
- snakemake pipeline for creating trees from sequence sets☆93Updated 2 months ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆16Updated 5 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆63Updated 5 years ago
- A brief, quick and dirty introduction to Sequence Similarity Networks☆32Updated 3 years ago
- Cython bindings and Python interface to HMMER3.☆154Updated 2 weeks ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆120Updated 3 weeks ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Enumerating biosynthetic pathways in metabolic networks☆13Updated 11 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆204Updated 2 months ago
- Python interface for running COMETS simulations and analyzing the results☆15Updated 2 months ago