Alternatives and similar repositories for FastKnock

Users that are interested in FastKnock are comparing it to the libraries listed below

• SysBioChalmers / ecModels
  A container for all enzyme constrained models created by GECKO.
  ☆16Updated 3 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 2 months ago
• klamt-lab / straindesign
  StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
  ☆47Updated last month
• pstjohn / d3flux
  D3.js based visualizations of cobrapy metabolic models
  ☆50Updated 5 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 5 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆115Updated last month
• DD-DeCaF / tutorials
  Teaching materials for cobrapy, cameo, escher and DD-DeCaF
  ☆25Updated 3 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆30Updated 2 years ago
• ModelSEED / ModelSEEDpy
  Python package for building and analyzing models using ModelSEED
  ☆25Updated 9 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆43Updated 6 months ago
• EPFL-LCSB / etfl
  ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
  ☆16Updated 6 months ago
• ModelSEED / ModelSEEDDatabase
  This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…
  ☆65Updated 3 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆173Updated last year
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆32Updated 3 years ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆61Updated last month
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated last week
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆121Updated last week
• SBRG / bigg_models
  The BiGG Models website server
  ☆88Updated 6 years ago
• klamt-lab / autopacmen
  Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
  ☆15Updated 10 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated last year
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• satoken / centroid-rna-package
  Centroid RNA package
  ☆19Updated 5 years ago
• maranasgroup / dGPredictor
  ☆10Updated 2 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆13Updated 2 years ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆155Updated this week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• segrelab / cometspy
  Python interface for running COMETS simulations and analyzing the results
  ☆15Updated 3 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆116Updated 3 years ago