☆11Oct 21, 2023Updated 3 years ago
Alternatives and similar repositories for FastKnock
Users that are interested in FastKnock are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Aug 29, 2025Updated last year
- Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also chec…☆17Feb 28, 2025Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Oct 7, 2026Updated 3 weeks ago
- A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism☆15Feb 12, 2025Updated last year
- Enzyme-constrained genome-scale models in python☆39Oct 25, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆46Oct 22, 2026Updated last week
- ☆24Oct 19, 2023Updated 3 years ago
- Metabolic Engineering Workbench☆43Jun 9, 2024Updated 2 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GEC…☆95Oct 16, 2026Updated 2 weeks ago
- ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints☆19Jul 8, 2025Updated last year
- Code repository for paper "Generative artificial intelligence GPT-4 accelerates knowledge mining and machine learning for synthetic biolo…☆13May 14, 2023Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Updated this week
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆29Sep 3, 2024Updated 2 years ago
- Online workflow guidelines for metabolomics☆25Updated this week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆48Jul 27, 2026Updated 3 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆33Nov 7, 2024Updated last year
- The consensus GEM for Saccharomyces cerevisiae☆138Oct 23, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A container for all enzyme constrained models created by GECKO.☆19Sep 24, 2026Updated last month
- The official PySCeS project source code repository.☆40Oct 14, 2026Updated 2 weeks ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Feb 25, 2023Updated 3 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 7 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated 3 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆98Jun 15, 2026Updated 4 months ago
- REKINDLE is a python package for training the generative adversarial networks (GANs) to parametrize large-scale nonlinear kinetic models …☆10Oct 11, 2022Updated 4 years ago
- ☆10Sep 29, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins☆13Nov 28, 2022Updated 3 years ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 5 months ago
- FluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derive…☆11Mar 5, 2026Updated 7 months ago
- Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)☆14May 7, 2016Updated 10 years ago
- Constraint-based modeling of metabolism using Mixed Integer Optimization☆12Sep 24, 2024Updated 2 years ago
- Genome scale metabolic models in SBML format☆11Nov 16, 2021Updated 4 years ago