foerstner-lab / READemptionLinks
A pipeline for the computational evaluation of RNA-Seq data
☆40Updated last year
Alternatives and similar repositories for READemption
Users that are interested in READemption are comparing it to the libraries listed below
Sorting:
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- A python package and a set of shell commands to handle GTF files☆50Updated last month
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- Specifications for PacBio® native file formats☆31Updated last year
- Master of Pores 2☆23Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- detection of duplications and deletions using Python based machine learning techniques☆28Updated 6 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆33Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last week
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- ☆29Updated 3 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- ☆27Updated last month