Python library for interacting with KNOSSOS data sets and annotation files
☆10Sep 10, 2026Updated last month
Alternatives and similar repositories for knossos_utils
Users that are interested in knossos_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆46Oct 9, 2026Updated 3 weeks ago
- PyTorch implementation of linear and convolutional layers with fixed, random feedback weights.☆15Mar 14, 2021Updated 5 years ago
- ☆12Mar 25, 2022Updated 4 years ago
- Utilities for working with FIB-SEM data (Extract/analyze data, register FIB-SEM stacks, analyze noise etc.)☆14Sep 18, 2026Updated last month
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18May 18, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alignment to Median Smoothed Template for FIB-SEM data☆11Dec 12, 2025Updated 10 months ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Jan 29, 2022Updated 4 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Oct 6, 2026Updated 3 weeks ago
- InVivoTools a set of neurophysiology tools, forked from VanHooserTools, containing tools for visual stimulation and analysis of calcium i…☆14Jun 2, 2026Updated 5 months ago
- 3-D imaging visualisation through slicing☆31Updated this week
- Instrument Control for Microscopes and Accessories☆12Jan 31, 2019Updated 7 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Commonly used 3rd party source code for Matlab - sometimes with some minor fixes☆10Jul 30, 2013Updated 13 years ago
- WebGL-based viewer for volumetric data☆25Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 6, 2024Updated 2 years ago
- Motion Tracking☆13Jan 12, 2023Updated 3 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Aug 19, 2026Updated 2 months ago
- ☆66Mar 6, 2021Updated 5 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.☆176Oct 27, 2026Updated last week
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆68Oct 20, 2026Updated 2 weeks ago
- MATLAB Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data☆13Jul 15, 2020Updated 6 years ago
- A library to facilitate machine learning on multi-dimensional images.☆93Updated this week
- Neural Optimal Feedback Control☆12Mar 5, 2022Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.☆31Oct 6, 2026Updated 3 weeks ago
- SEAMLeSS (under active development)☆11Aug 23, 2021Updated 5 years ago
- Reconstruction ICA☆10Aug 25, 2017Updated 9 years ago
- Versatile acquisition software for serial block-face electron microscopy☆27Oct 21, 2026Updated 2 weeks ago
- Segment axon and myelin from microscopy data. Written in Matlab.☆19Jun 12, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PIPython is a collection of Python modules to access a PI device and process GCS data.☆15Oct 14, 2019Updated 7 years ago
- For laying organizational groundwork☆18Jul 12, 2020Updated 6 years ago
- Code for computing the hidden biases in deep networks and its applications☆14Feb 23, 2023Updated 3 years ago
- Distributed Gradient-Domain Processing of Planar and Spherical Images☆27Dec 30, 2020Updated 5 years ago
- This repository contains the entire pipline (including data preprocessing, training, testing, evaluation and visualization) for the Shear…☆11Dec 3, 2019Updated 6 years ago
- Basic integration for Slack notifications for Matlab.☆21Nov 20, 2014Updated 11 years ago
- ☆17Jan 19, 2022Updated 4 years ago