htem / FANC_auto_recon
Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
☆12Updated 2 weeks ago
Alternatives and similar repositories for FANC_auto_recon:
Users that are interested in FANC_auto_recon are comparing it to the libraries listed below
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆28Updated this week
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆17Updated 4 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆14Updated this week
- Fast, volumetric cell detection. In development.☆17Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated last month
- ☆12Updated last month
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆37Updated 11 months ago
- Brainways☆16Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- Tools for working with single-neuron morphological reconstructions☆21Updated last year
- pipeline for volumetric cell segmentation☆12Updated last month
- motion correction☆17Updated 2 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated last week
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 10 months ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆32Updated 3 weeks ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- ☆17Updated last year
- ☆34Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 months ago
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated last week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆81Updated last month
- ☆40Updated 9 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆54Updated 3 months ago