Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
☆16May 6, 2026Updated 4 months ago
Alternatives and similar repositories for FANC_auto_recon
Users that are interested in FANC_auto_recon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transforms for navis that enable mapping between different Drosophila template brains.☆35Sep 2, 2026Updated 3 weeks ago
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆24May 16, 2026Updated 4 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆39Sep 5, 2026Updated 2 weeks ago
- Annotations for the FlyWire dataset.☆75Jul 21, 2026Updated 2 months ago
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆18Dec 18, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Updated this week
- Neurotransmitter prediction from EM.☆17Feb 28, 2025Updated last year
- ☆43Sep 1, 2025Updated last year
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Python library for analysis of neuroanatomical data.☆135Sep 6, 2026Updated 2 weeks ago
- Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.☆41Jul 2, 2025Updated last year
- WebGL-based viewer for volumetric data☆25Sep 12, 2026Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆29Jul 9, 2026Updated 2 months ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆36Mar 22, 2026Updated 6 months ago
- Unsupervised Instance Segmentation in Microscopy☆27Apr 3, 2024Updated 2 years ago
- We present an algorithm based on DBM that takes into account the stochastic nature of dielectric breakdown during the formation of Lichte…☆14Jun 29, 2024Updated 2 years ago
- ☆37Aug 27, 2026Updated 3 weeks ago
- Masked variational autoencoders for modeling conditional distributions of neural and behavioral data☆11Feb 24, 2025Updated last year
- Python client utilties for interacting with the neuPrint connectome analysis service☆81Jul 20, 2026Updated 2 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆46Jul 28, 2025Updated last year
- Read and write Neuroglancer datasets programmatically.☆175Updated this week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated 2 years ago
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- ☆11Aug 12, 2026Updated last month
- Human cortical organoid/spheroid intelligence system☆16Jun 27, 2024Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆201Updated this week
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆18Jun 20, 2023Updated 3 years ago
- An interactive computing platform for studying the function of executable circuits constructed from fly brain data.☆106Sep 29, 2025Updated 11 months ago
- A Python package for feature extraction of neural morphologies☆48Aug 19, 2026Updated last month
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆43Jul 23, 2024Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 5 months ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- Micro-Manager Open Source Microscopy Software (http://valelab.ucsf.edu/~MM/MMwiki/). SVN-tracking Git repository☆15Jul 14, 2016Updated 10 years ago
- stcli - a repl command line crypto wallet for stellar that is simple and all in one python file☆16May 23, 2023Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆48Jun 7, 2026Updated 3 months ago