Alternatives and similar repositories for FANC_auto_recon

Users that are interested in FANC_auto_recon are comparing it to the libraries listed below

• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆29Updated this week
• CAVEconnectome / nglui
  ☆12Updated 2 weeks ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆17Updated this week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆41Updated this week
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated this week
• nel-lab / FIOLA
  ☆34Updated 2 weeks ago
• adamshch / SEUDO
  ☆8Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆18Updated 2 weeks ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• yashsmehta / MetaLearnPlasticity
  A deep learning based method to uncover brain learning rules from behavior or neural experimental data.
  ☆17Updated 5 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated this week
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆17Updated 3 weeks ago
• connectome-neuprint / neuprint-python
  Python client utilties for interacting with the neuPrint connectome analysis service
  ☆33Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated 2 months ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆19Updated this week
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆10Updated last week
• neuroinformatics-unit / ethology
  Mix-and-match computer vision tools for your animal behaviour analysis
  ☆17Updated this week
• neuroinformatics-unit / python-cookiecutter
  Utility to create a basic Python project structure with tests, CI etc.
  ☆28Updated this week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 months ago
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆32Updated this week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆49Updated 3 months ago
• neuroinformatics-unit / swc-hpc-pose-estimation
  Pose estimation scripts to be run on the SWC HPC cluster
  ☆12Updated last year
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated last week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated this week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year