htem / FANC_auto_recon
Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
☆12Updated 3 weeks ago
Alternatives and similar repositories for FANC_auto_recon:
Users that are interested in FANC_auto_recon are comparing it to the libraries listed below
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆25Updated 2 weeks ago
- ☆10Updated last month
- pipeline for volumetric cell segmentation☆12Updated 3 weeks ago
- Brainways☆16Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆38Updated last week
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆15Updated 2 months ago
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated this week
- Python client utilties for interacting with the neuPrint connectome analysis service☆32Updated last month
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 4 years ago
- A package to manage electrophysiology analysis.☆17Updated this week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆47Updated last year
- Tools for working with single-neuron morphological reconstructions☆21Updated 10 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 3 weeks ago
- Browser-based NWB visualization and DANDI exploration☆53Updated this week
- motion correction☆16Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆34Updated 9 months ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated last week
- ☆10Updated last year
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆13Updated this week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- Napari plugin for working with video files.☆12Updated 5 months ago
- Region Of Interest Classification and Tracking☆16Updated this week
- Serial-section automated anatomy extension for ScanImage☆12Updated this week
- ☆17Updated last year