Alternatives and similar repositories for FANC_auto_recon

Users that are interested in FANC_auto_recon are comparing it to the libraries listed below

• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆35Updated last month
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 4 months ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 3 weeks ago
• jasper-tms / the-BANC-fly-connectome
  Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord
  ☆15Updated last month
• yashsmehta / MetaLearnPlasticity
  A deep learning based method to uncover brain learning rules from behavior or neural experimental data.
  ☆17Updated last year
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆22Updated last week
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last week
• berenslab / MorphoPy
  A Python package for feature extraction of neural morphologies
  ☆46Updated 3 months ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆19Updated 2 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated 2 months ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆241Updated 9 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 2 weeks ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆60Updated this week
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆170Updated 2 weeks ago
• YijieYin / connectome_interpreter
  ☆26Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆57Updated 2 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆112Updated 3 months ago
• CAVEconnectome / nglui
  ☆13Updated 2 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆143Updated 3 weeks ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆21Updated this week
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆31Updated 2 years ago
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆16Updated 3 years ago
• bkntr / brainways
  Brainways
  ☆22Updated 5 months ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated this week
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated last month
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year