Alternatives and similar repositories for NeuTu

Users that are interested in NeuTu are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆91Updated 2 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated last week
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 9 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆63Updated last month
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 5 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆93Updated 4 years ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆141Updated this week
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆25Updated 8 months ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated 2 years ago
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 4 years ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆113Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆56Updated 3 weeks ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆169Updated this week
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆45Updated 2 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated 2 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆132Updated 2 weeks ago
• CAVEconnectome / nglui
  ☆13Updated 2 months ago
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆54Updated 6 months ago
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 10 months ago
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated 3 months ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated 2 weeks ago
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆42Updated 4 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated last week
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 5 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago