Alternatives and similar repositories for NeuTu

Users that are interested in NeuTu are comparing it to the libraries listed below

• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated last month
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 5 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• owenrandlett / Z-Brain
  Z-Brain Viewer and Analysis Scripts for MAP-Mapping
  ☆22Updated 4 months ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆110Updated last year
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆52Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆53Updated this week
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• SystemsResearch / CUBIC_nprot
  Code for the image processing and analysis described our Nature Protocols paper.
  ☆10Updated 10 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆45Updated last year
• clij / clij-docs
  Online documentation and reference for CLIJ
  ☆28Updated 4 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆123Updated last week
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆87Updated last year
• fiji / SNT
  Legacy project superseded by https://github.com/morphonets/SNT
  ☆12Updated 4 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated last week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆86Updated last month
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆106Updated 6 months ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆20Updated 5 months ago
• ActiveBrainAtlas / MouseBrainAtlas
  A system for building mouse brain atlas from histology series
  ☆11Updated 5 years ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆88Updated 4 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆157Updated this week
• natverse / natverse
  Umbrella package to help install/load nat packages
  ☆11Updated 4 years ago
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆22Updated last week
• MouseLand / receptivefield-explorer
  GUI to compute and explore receptive fields, primarily from calcium imaging recordings
  ☆13Updated 4 years ago