urakubo / UNI-EMLinks
A unified environment for DNN-based automated segmentation of neuronal EM images
☆38Updated last year
Alternatives and similar repositories for UNI-EM
Users that are interested in UNI-EM are comparing it to the libraries listed below
Sorting:
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Updated 3 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ☆17Updated 7 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆182Updated last month
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Distributed segmentation for bio-image-analysis☆40Updated 7 months ago
- Python module to analyse skeleton (thin object) images☆138Updated 2 months ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- ☆22Updated 4 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆54Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆26Updated 3 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 3 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago
- Joint training of denoising and segmentation.☆76Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆16Updated 9 years ago
- 2D image registration in python, using napari.☆16Updated 4 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- This is our implementation of Probabilistic Noise2Void☆77Updated 2 years ago
- 🌈☆66Updated 2 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆186Updated last week
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Updated last year
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆109Updated 5 years ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 6 months ago