A unified environment for DNN-based automated segmentation of neuronal EM images
☆38Aug 28, 2024Updated last year
Alternatives and similar repositories for UNI-EM
Users that are interested in UNI-EM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 4 years ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated 2 months ago
- ☆16Nov 2, 2016Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- Automatic segmentation of electron microscopy volumes☆30Oct 23, 2012Updated 13 years ago
- Aligner for large scale serial section image data☆17Jul 7, 2023Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆29Sep 18, 2025Updated 6 months ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- The mutex watershed for image segmentation.☆67May 6, 2021Updated 4 years ago
- 🌈☆67Oct 10, 2025Updated 5 months ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆346Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Pytorch implementation of the LearnedRandomWalker module☆29Oct 28, 2020Updated 5 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Flexible modulation of sequence generation in the entorhinal-hippocampal system.☆13Apr 5, 2022Updated 3 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆29May 4, 2017Updated 8 years ago
- ☆20Apr 14, 2023Updated 2 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 8 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆23Feb 24, 2026Updated last month
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 2020 Gaofen Challenge data, baselines, and metrics☆10Apr 2, 2021Updated 4 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Sep 16, 2025Updated 6 months ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Dec 30, 2022Updated 3 years ago
- ☆22Jan 6, 2026Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- Read and write Neuroglancer datasets programmatically.☆171Mar 17, 2026Updated last week
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆191Mar 20, 2026Updated last week
- WaterNetV1. Official implementation of "WaterNet: An adaptive matching pipeline for segmenting water with volatile appearance", published…☆11Jul 21, 2023Updated 2 years ago
- YOLOX is a high-performance anchor-free YOLO, exceeding yolov3~v5 with MegEngine, ONNX, TensorRT, ncnn, and OpenVINO supported. Documenta…☆21Sep 11, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Efficient Neural Network Loss Landscape Generation