google / ffn
Flood-Filling Networks for instance segmentation in 3d volumes.
☆323Updated 2 months ago
Alternatives and similar repositories for ffn:
Users that are interested in ffn are comparing it to the libraries listed below
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- The mutex watershed for image segmentation.☆67Updated 3 years ago
- Read and write Neuroglancer datasets programmatically.☆144Updated this week
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- This package provides TensorFlow Ops for multidimensional volumetric image augmentation.☆134Updated last month
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆180Updated last month
- DLTK Model Zoo☆114Updated 6 years ago
- 3D Unet Equipped with Advanced Deep Learning Methods☆61Updated 5 years ago
- Python module to analyse skeleton (thin object) images☆121Updated 3 months ago
- Code for In silico labeling: Predicting fluorescent labels in unlabeled images☆260Updated 4 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆36Updated 6 months ago
- ☆90Updated last year
- 🌈☆54Updated last year
- Fully-connected (dense) 3D CRF for processing biomedical scans☆137Updated 6 years ago
- Axon/Myelin segmentation using Deep Learning☆118Updated this week
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆38Updated 3 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆64Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 8 months ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆195Updated 4 years ago
- Right Ventricle Cardiac MRI Segmentation☆278Updated 7 years ago
- This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convoluti…☆163Updated 5 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆146Updated 2 weeks ago
- Dataset of head and neck CT scans and segmentations in NRRD format.☆90Updated 4 years ago
- Predictive Image Registration☆136Updated 6 years ago
- Three dimensional cross-modal image inference☆154Updated 4 years ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 2 years ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated this week