Flood-Filling Networks for instance segmentation in 3d volumes.
☆344Updated this week
Alternatives and similar repositories for ffn
Users that are interested in ffn are comparing it to the libraries listed below
Sorting:
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆188Updated this week
- ☆17Feb 3, 2018Updated 8 years ago
- The mutex watershed for image segmentation.☆67May 6, 2021Updated 4 years ago
- 🌈☆67Oct 10, 2025Updated 4 months ago
- Read and write Neuroglancer datasets programmatically.☆171Updated this week
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆19Jan 22, 2026Updated last month
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- ☆49Jan 28, 2026Updated last month
- A curated list of resources for 3D segmentation of neurites in EM images☆56Mar 11, 2024Updated last year
- ☆11Jun 11, 2020Updated 5 years ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated 9 months ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated last month
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 6 months ago
- Implementation of Adversarial Variational Optimization in PyTorch☆43Aug 7, 2018Updated 7 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 7 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆21Updated this week
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 7 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Nov 19, 2025Updated 3 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆13Jul 27, 2025Updated 7 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 5 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 2 years ago
- Block-wise task scheduling for large nD volumes.☆33Mar 28, 2025Updated 10 months ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 6 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆65Jan 17, 2026Updated last month
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 2 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Dec 2, 2025Updated 2 months ago
- An official TensorFlow implementation of "Neural Program Synthesis from Diverse Demonstration Videos" (ICML 2018) by Shao-Hua Sun, Hyeonw…☆102Mar 24, 2023Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- A library to facilitate machine learning on multi-dimensional images.☆89Feb 17, 2026Updated last week
- An implementation of shampoo☆78Mar 9, 2018Updated 7 years ago
- Visualize, share and annotate your large 3D images online☆168Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Scalable Optical Flow-based Image Montaging and Alignment☆87Jan 26, 2026Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆21Feb 19, 2026Updated last week
- Aligner for large scale serial section image data☆16Jul 7, 2023Updated 2 years ago
- Models and Codes for the paper Question Relevance in VQA: Identifying Non-Visual And False-Premise Questions☆14Aug 6, 2018Updated 7 years ago
- Automatic segmentation of electron microscopy volumes☆78Jan 15, 2021Updated 5 years ago