google / ffnLinks
Flood-Filling Networks for instance segmentation in 3d volumes.
☆343Updated 3 weeks ago
Alternatives and similar repositories for ffn
Users that are interested in ffn are comparing it to the libraries listed below
Sorting:
- Axon/Myelin segmentation using Deep Learning☆123Updated this week
- This package provides TensorFlow Ops for multidimensional volumetric image augmentation.☆138Updated 5 months ago
- Code for In silico labeling: Predicting fluorescent labels in unlabeled images☆263Updated 5 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…☆170Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- RadIO is a library for data science research of computed tomography imaging☆226Updated 4 years ago
- DLTK Model Zoo☆113Updated 7 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆188Updated this week
- Official SuperElastix repository☆88Updated 6 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆204Updated 5 years ago
- Tool for graph-based image segmentation and analysis☆22Updated 8 years ago
- 🌈☆67Updated 3 months ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- Dataset of head and neck CT scans and segmentations in NRRD format.☆99Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- U-net based segmentation of nuclei in microscopy images☆53Updated 7 years ago
- Predictive Image Registration☆140Updated 7 years ago
- This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convoluti…☆164Updated 6 years ago
- Read and write Neuroglancer datasets programmatically.☆171Updated last week
- Automatic segmentation of electron microscopy volumes☆78Updated 5 years ago
- Fully-connected (dense) 3D CRF for processing biomedical scans☆138Updated 7 years ago
- ☆16Updated 9 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- TOMAAT server-side☆25Updated 6 years ago
- ☆92Updated 2 years ago
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆194Updated 11 months ago
- 3D convolutional neural network for MRI brain extraction☆125Updated 4 years ago
- UNet deep learning model for medical image segmentation☆49Updated 2 years ago