Flood-Filling Networks for instance segmentation in 3d volumes.
☆348Apr 9, 2026Updated last month
Alternatives and similar repositories for ffn
Users that are interested in ffn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Feb 3, 2018Updated 8 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- WebGL-based viewer for volumetric data☆1,323Updated this week
- Official implementation, datasets and trained models of "SegNeuron: 3D Neuron Instance Segmentation in Any EM Volume with a Generalist Mo…☆22Mar 29, 2026Updated last month
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Read and write Neuroglancer datasets programmatically.☆173Apr 24, 2026Updated 3 weeks ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated last year
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 9 months ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- ☆53May 6, 2026Updated last week
- View connectomic data stored in neuPrint☆27Apr 17, 2026Updated last month
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated 11 months ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated 4 months ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆26Feb 24, 2026Updated 2 months ago
- A curated list of resources for 3D segmentation of neurites in EM images☆57Mar 11, 2024Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 weeks ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 7 years ago
- ☆11Jun 11, 2020Updated 5 years ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Apr 24, 2026Updated 3 weeks ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 2 weeks ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 2 months ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Visualize, share and annotate your large 3D images online☆174Updated this week
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Dec 2, 2025Updated 5 months ago
- Scalable Optical Flow-based Image Montaging and Alignment☆95Mar 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 2 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆67Apr 24, 2026Updated 3 weeks ago
- Aligner for large scale serial section image data☆18Jul 7, 2023Updated 2 years ago
- Implementation of Adversarial Variational Optimization in PyTorch☆42Aug 7, 2018Updated 7 years ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27May 9, 2026Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆64Apr 9, 2026Updated last month
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistency☆16Jul 16, 2023Updated 2 years ago