Scalable Optical Flow-based Image Montaging and Alignment
☆97Mar 2, 2026Updated 3 months ago
Alternatives and similar repositories for sofima
Users that are interested in sofima are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated last month
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Updated this week
- ☆56May 26, 2026Updated last week
- python tools for BigDataViewer☆23Dec 29, 2024Updated last year
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆90Jun 1, 2026Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆23May 21, 2026Updated 2 weeks ago
- Block-wise operations for large nD volumes☆45Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- napari plugin for trackastra☆18Nov 12, 2025Updated 6 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 10 months ago
- ☆42Sep 1, 2025Updated 9 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated last week
- Multi-Object Tracking with Integer Linear Equations☆39May 7, 2026Updated last month
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jun 1, 2026Updated last week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 10 months ago
- Adaptive Optics plugin for MicroManager☆13May 23, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆118Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆53Updated this week
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated last month
- Tools for distributed alignment of massive images☆95Updated this week
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆35Mar 25, 2026Updated 2 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- Read and write Neuroglancer datasets programmatically.☆173Updated this week
- A fully scalable robust image feature extraction library.☆28May 13, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- View connectomic data stored in neuPrint☆27Jun 1, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆36May 19, 2026Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 2 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- Pure python/C++ micro-manager ecosystem☆51Jun 1, 2026Updated last week