KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
☆77Jun 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for knossos
Users that are interested in knossos are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18May 18, 2020Updated 6 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 6 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 5 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 11 months ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 4 years ago
- Collaborative Annotation Toolkit for Massive Amounts of Image Data☆200Jul 1, 2026Updated last week
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 9 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Not HDF5☆202Jun 18, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 2 months ago
- A library to facilitate machine learning on multi-dimensional images.☆91Updated this week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 2 weeks ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆13Sep 7, 2021Updated 4 years ago
- Segment an image into super pixels☆21Dec 12, 2011Updated 14 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆17Jul 15, 2015Updated 10 years ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated 5 months ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Versatile acquisition software for serial block-face electron microscopy☆26May 20, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Hennestad et al. 2022☆23Jun 8, 2026Updated last month
- Dendritic Spine Analysis Software☆12Apr 27, 2023Updated 3 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆350Updated this week
- Plugins collated for the Fiji Cookbook☆27Jun 14, 2022Updated 4 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆29May 4, 2017Updated 9 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆81Jul 3, 2026Updated last week
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- clathrin-mediated endocytosis analysis☆11May 29, 2026Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- An OMERO.web app allowing to view images☆20Jun 30, 2026Updated last week
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆13Nov 22, 2022Updated 3 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆37Jun 4, 2026Updated last month
- ☆22Jan 6, 2026Updated 6 months ago