Alternatives and similar repositories for knossos

Users that are interested in knossos are comparing it to the libraries listed below

• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆86Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 months ago
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆80Updated last month
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆156Updated last week
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆79Updated 7 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆85Updated 3 weeks ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆88Updated 2 years ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆130Updated last month
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated 3 weeks ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 5 months ago
• scalableminds / webknossos
  Visualize, share and annotate your large 3D images online
  ☆155Updated this week
• scopetools / cudadecon
  GPU accelerated 3D image deconvolution using CUDA
  ☆36Updated last year
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆55Updated 2 months ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆39Updated 3 months ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆45Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆60Updated 2 months ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆70Updated 2 years ago
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated 3 months ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆110Updated last year
• catmaid / CATMAID
  Collaborative Annotation Toolkit for Massive Amounts of Image Data
  ☆196Updated this week
• SCIInstitute / fluorender
  FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis
  ☆45Updated this week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆52Updated this week
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last year
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆67Updated 2 weeks ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆20Updated 5 months ago
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 5 years ago
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆22Updated this week