KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
☆77Dec 2, 2025Updated 3 months ago
Alternatives and similar repositories for knossos
Users that are interested in knossos are comparing it to the libraries listed below
Sorting:
- Visualize, share and annotate your large 3D images online☆169Updated this week
- Storing and accessing large Julia array locally or in cloud storage without server.☆13Jan 29, 2022Updated 4 years ago
- Aligner for large scale serial section image data☆16Jul 7, 2023Updated 2 years ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated last month
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18May 18, 2020Updated 5 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- Image Annotator Web-app using Plotly-Dash, MongoDB, and MLflow☆14Nov 22, 2022Updated 3 years ago
- Hennestad et al. 2022☆23Mar 3, 2026Updated last week
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 3 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 4 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- Interactive Hodgkin-Huxley neuron simulator☆19May 30, 2020Updated 5 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 9 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.☆28Sep 18, 2025Updated 5 months ago
- Block-wise task scheduling for large nD volumes.☆33Mar 28, 2025Updated 11 months ago
- A library to facilitate machine learning on multi-dimensional images.☆88Mar 2, 2026Updated last week
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 11 months ago
- Dendritic Spine Analysis Software☆13Apr 27, 2023Updated 2 years ago
- Official Implementation of Neural Surface Refinement for Modeling Transparent Objects (CVPR 2024)☆18Jul 18, 2024Updated last year
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated last month
- Not HDF5☆198Mar 3, 2026Updated last week
- Ultrahyperbolic Representation Learning☆13Jul 5, 2020Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆345Feb 25, 2026Updated last week
- An extended typed Lambda Calculus☆21Aug 5, 2024Updated last year
- ☆19Sep 23, 2022Updated 3 years ago
- ☆40Sep 1, 2025Updated 6 months ago
- Fast detector with NEON accelerations☆21Jan 13, 2021Updated 5 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆80Feb 19, 2026Updated 2 weeks ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Jul 15, 2015Updated 10 years ago
- Simple PulseAudio-based tool for making podcast interviews☆19Jul 17, 2025Updated 7 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆190Jan 15, 2026Updated last month
- CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and anno…☆20Feb 28, 2026Updated last week
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- NEST GPU☆23Feb 9, 2026Updated last month
- Instructive examples using projects in the Nengo ecosystem☆23Nov 15, 2023Updated 2 years ago