knossos-project / knossos
KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
☆74Updated 3 weeks ago
Alternatives and similar repositories for knossos:
Users that are interested in knossos are comparing it to the libraries listed below
- www.vaa3d.org☆78Updated 7 years ago
- Distributed segmentation for bio-image-analysis☆37Updated 2 weeks ago
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 9 months ago
- Scalable Optical Flow-based Image Montaging and Alignment☆68Updated 2 months ago
- Visualize, share and annotate your large 3D images online☆140Updated this week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆60Updated 5 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Updated last month
- Library for producing and processing on the Adaptive Particle Representation (APR).☆48Updated last month
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago
- Software package for neuron reconstruction and visualization☆38Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆84Updated last year
- ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.☆31Updated 6 months ago
- FluoRender is an interactive tool for confocal microscopy data analysis.☆43Updated this week
- The ImageJ plugin to run deep-learning models☆93Updated last week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 2 weeks ago
- Read and write Neuroglancer datasets programmatically.☆146Updated last week
- GPU-accelerated image processing for everyone☆52Updated 9 months ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 2 weeks ago
- Aligner for large scale serial section image data☆15Updated last year
- Collaborative Annotation Toolkit for Massive Amounts of Image Data☆190Updated this week
- A napari plugin for itk-elastix☆38Updated 10 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated 3 weeks ago
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆45Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated 2 weeks ago
- ImgLib2-based viewer for registered SPIM stacks and more☆40Updated 3 weeks ago