Alternatives and similar repositories for knossos

Users that are interested in knossos are comparing it to the libraries listed below

• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆73Updated 2 weeks ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆78Updated 7 years ago
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆72Updated 2 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated last week
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last month
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated 2 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated last week
• catmaid / CATMAID
  Collaborative Annotation Toolkit for Massive Amounts of Image Data
  ☆190Updated 2 weeks ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆92Updated this week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆59Updated 2 years ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆146Updated last week
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆35Updated last year
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated 2 months ago
• scalableminds / webknossos
  Visualize, share and annotate your large 3D images online
  ☆142Updated this week
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆84Updated last year
• bigdataviewer / bigdataviewer-core
  ImgLib2-based viewer for registered SPIM stacks and more
  ☆40Updated 3 weeks ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for confocal microscopy data analysis.
  ☆45Updated this week
• scopetools / cudadecon
  GPU accelerated 3D image deconvolution using CUDA
  ☆35Updated 9 months ago
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆51Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆30Updated last month
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated 3 weeks ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆15Updated this week
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 11 months ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated last month
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆59Updated last month
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 4 years ago
• Vaa3D / release
  Binary releases of Vaa3D and related software components
  ☆44Updated last year
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆67Updated 2 years ago
• sanderslab / magellanmapper
  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  ☆21Updated last month