seung-lab / DeepEMLinks
Deep Learning for EM Connectomics
☆15Updated 3 years ago
Alternatives and similar repositories for DeepEM
Users that are interested in DeepEM are comparing it to the libraries listed below
Sorting:
- ☆21Updated 4 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- 🌈☆62Updated 6 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ☆17Updated 7 years ago
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 2 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated 3 weeks ago
- Joint training of denoising and segmentation.☆74Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆39Updated 4 months ago
- 3D shape analysis using deep learning☆28Updated this week
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆37Updated last month
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 7 months ago
- ☆38Updated last year
- A visualization app for 3D-registered data processed in ABBA and QuPath☆19Updated 2 years ago
- ☆31Updated 4 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated this week
- Open source Python library for building bioimage analysis pipelines☆182Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago