seung-lab / DeepEMLinks
Deep Learning for EM Connectomics
☆15Updated 2 years ago
Alternatives and similar repositories for DeepEM
Users that are interested in DeepEM are comparing it to the libraries listed below
Sorting:
- ☆20Updated 4 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 7 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for distributed alignment of massive images☆82Updated this week
- ☆17Updated 7 years ago
- 🌈☆57Updated 2 months ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- Distributed segmentation for bio-image-analysis☆38Updated last month
- ☆10Updated last year
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆16Updated this week
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆18Updated last month
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated 2 weeks ago
- MorphoFeatures code and data☆21Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆32Updated 2 months ago
- Affinity based segmentation algorithms and tools☆10Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week
- Aligner for large scale serial section image data☆16Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- 3D shape analysis using deep learning☆24Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated this week
- ☆31Updated 4 years ago
- ☆13Updated 4 months ago