Flood filling networks for segmenting electron microscopy of neural tissue
☆25Dec 26, 2022Updated 3 years ago
Alternatives and similar repositories for diluvian
Users that are interested in diluvian are comparing it to the libraries listed below
Sorting:
- ☆22Jan 6, 2026Updated 2 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 7 months ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- official implementation of the PatchPerPix instance segmentation method☆35Jun 27, 2023Updated 2 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 4 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 6 years ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Pytorch 0.41 implementation of the U-Net for image semantic segmentation + Dataloader for ISBI 2012 Challenge☆14Jul 15, 2020Updated 5 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 6 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated last year
- Flood-Filling Networks for instance segmentation in 3d volumes.☆345Feb 25, 2026Updated last week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Feb 27, 2026Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆20Feb 20, 2026Updated 2 weeks ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆22Feb 24, 2026Updated last week
- Read and write Neuroglancer datasets programmatically.☆170Feb 27, 2026Updated last week
- ☆16Jan 23, 2024Updated 2 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Jan 29, 2022Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆88Updated this week
- Python SDK for interacting with the BossDB REST API☆22Apr 18, 2025Updated 10 months ago
- Utilize the capability of GPT-4o Vision on the UHHGPT web portal☆12Aug 26, 2024Updated last year
- View connectomic data stored in neuPrint☆26Nov 19, 2025Updated 3 months ago
- A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers☆51Feb 15, 2022Updated 4 years ago
- Datasets☆26Apr 30, 2015Updated 10 years ago
- 🌈☆67Oct 10, 2025Updated 4 months ago
- Block-wise task scheduling for large nD volumes.☆33Mar 28, 2025Updated 11 months ago
- Automatic segmentation of electron microscopy volumes☆78Jan 15, 2021Updated 5 years ago
- Knowledge graph extraction from text using OpenAI ChatGPT for graph extraction and Neo4j for DB storage☆11Feb 26, 2024Updated 2 years ago
- Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.☆39Jul 2, 2025Updated 8 months ago
- Render transformed image tiles☆35Feb 17, 2026Updated 2 weeks ago
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆33Feb 24, 2026Updated last week
- Code translator from one language to another using AI☆10Feb 24, 2026Updated last week
- Automate dating apps with AI☆19Jan 18, 2024Updated 2 years ago
- Documentation of the 3D City Database and tools starting from version 5.☆12Feb 16, 2026Updated 2 weeks ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Scalable Optical Flow-based Image Montaging and Alignment☆87Feb 27, 2026Updated last week