aschampion / diluvianLinks
Flood filling networks for segmenting electron microscopy of neural tissue
☆23Updated 2 years ago
Alternatives and similar repositories for diluvian
Users that are interested in diluvian are comparing it to the libraries listed below
Sorting:
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆54Updated this week
- Distributed segmentation for bio-image-analysis☆39Updated 4 months ago
- A library to facilitate machine learning on multi-dimensional images.☆86Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆18Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 2 months ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for handling FIB-SEM data and annotations☆22Updated 6 months ago
- ☆21Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- 🌈☆62Updated 6 months ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 6 years ago
- Read and write Neuroglancer datasets programmatically.☆159Updated this week
- ☆17Updated 7 years ago
- Block-wise task scheduling for large nD volumes.☆32Updated 6 months ago
- Command line tool for registration of very large 3D volumes.☆15Updated last year
- ☆10Updated last year
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆24Updated last month
- Optimize image processing workflows in napari☆18Updated 5 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- WebGL-based viewer for volumetric data☆24Updated this week
- Napari gaming☆17Updated 3 years ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Updated 3 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆27Updated 5 years ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last week
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 7 months ago