aschampion / diluvian

Related projects ⓘ

Alternatives and complementary repositories for diluvian

• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆48Updated 3 weeks ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆35Updated 4 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆19Updated 3 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 3 years ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆26Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆77Updated last month
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆13Updated 11 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆49Updated 2 months ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 2 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• divelab / deepem3d
  ☆18Updated 6 years ago
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing.
  ☆13Updated 4 months ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆11Updated 2 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆44Updated this week
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆23Updated last month
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last week
• jni / zarpaint
  Paint segmentations directly to on-disk/remote zarr arrays
  ☆14Updated 4 months ago
• haesleinhuepf / natari
  Napari gaming
  ☆16Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆16Updated 2 weeks ago
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated 2 years ago
• imaris / ImarisWriter
  ☆31Updated 6 months ago
• funkelab / lsd
  🌈
  ☆52Updated last year
• lowe-lab-ucl / cnn-annotator
  Annotate microscopy images for CNN classifier
  ☆10Updated 2 years ago
• acquire-project / acquire-python
  Acquire: a multi-camera video streaming software focusing on microscopy
  ☆18Updated last week
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆17Updated last month
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆37Updated last year
• CAREamics / careamics
  A deep-learning library for N2V and friends
  ☆30Updated this week