aschampion / diluvianLinks
Flood filling networks for segmenting electron microscopy of neural tissue
☆25Updated 3 years ago
Alternatives and similar repositories for diluvian
Users that are interested in diluvian are comparing it to the libraries listed below
Sorting:
- Distributed segmentation for bio-image-analysis☆41Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆64Updated 2 weeks ago
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 3 weeks ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Updated 6 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆21Updated last week
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- ☆22Updated 3 weeks ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆187Updated 2 weeks ago
- Read and write Neuroglancer datasets programmatically.☆170Updated this week
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆15Updated 6 years ago
- A napari plugin for itk-elastix☆39Updated last month
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated last month
- Optimize image processing workflows in napari☆17Updated 8 months ago
- Block-wise task scheduling for large nD volumes.☆33Updated 10 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- 🌈☆67Updated 3 months ago
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- Tools for handling FIB-SEM data and annotations☆22Updated 9 months ago
- ☆49Updated last month
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 7 months ago
- ☆17Updated 7 years ago
- A napari plugin for making animations☆94Updated 3 weeks ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated this week
- Tools for distributed alignment of massive images☆92Updated 3 weeks ago