Alternatives and similar repositories for navis

Users that are interested in navis are comparing it to the libraries listed below

• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆19Updated 2 weeks ago
• CAVEconnectome / CAVEclient
  This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
  ☆35Updated 2 months ago
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆27Updated this week
• BlueBrain / NeuroMorphoVis
  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…
  ☆136Updated 3 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆171Updated last week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆144Updated last week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆172Updated this week
• connectome-neuprint / neuVid
  Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.
  ☆33Updated last month
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆47Updated last week
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆35Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆65Updated 3 weeks ago
• BlueBrain / NeuroM
  Neuronal Morphology Analysis Tool
  ☆108Updated 11 months ago
• CAVEconnectome / MeshParty
  ☆40Updated 5 months ago
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆39Updated last year
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆224Updated last week
• berenslab / MorphoPy
  A Python package for feature extraction of neural morphologies
  ☆46Updated 3 months ago
• CAVEconnectome / nglui
  ☆13Updated 3 months ago
• brainglobe / morphapi
  A Python package to download neuronal morphologies
  ☆18Updated last week
• BlueBrain / MorphIO
  A python and C++ library for reading and writing neuronal morphologies
  ☆28Updated 11 months ago
• BlueBrain / TMD
  A python package for the topological analysis of neurons.
  ☆28Updated 11 months ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆29Updated 9 months ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆35Updated last week
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• suny-downstate-medical-center / netpyne
  A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks…
  ☆164Updated 2 weeks ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆22Updated last year
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆21Updated 2 weeks ago
• brainglobe / brainrender
  A Python package to visualise neuroanatomical data in atlas space
  ☆622Updated last week
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆87Updated 2 weeks ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆114Updated 4 months ago