Python library for analysis of neuroanatomical data.
☆116Jul 24, 2026Updated this week
Alternatives and similar repositories for navis
Users that are interested in navis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆24Jul 9, 2026Updated 2 weeks ago
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆24Mar 19, 2025Updated last year
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Jul 14, 2026Updated last week
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆21May 16, 2026Updated 2 months ago
- Transforms for navis that enable mapping between different Drosophila template brains.☆19Jan 28, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆43Sep 1, 2025Updated 10 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Updated this week
- Neurotransmitter prediction from EM.☆17Feb 28, 2025Updated last year
- Read and write Neuroglancer datasets programmatically.☆174Updated this week
- ☆13Jun 17, 2026Updated last month
- Mesh containment and line segment intersection queries in Python (over rust)☆12Nov 19, 2025Updated 8 months ago
- Annotations for the FlyWire dataset.☆47Updated this week
- Python SDK for interacting with the BossDB REST API☆23Apr 18, 2025Updated last year
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated last week
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆46Jul 10, 2026Updated 2 weeks ago
- Explore the FlyWire Connectome☆77Jun 3, 2025Updated last year
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 3 weeks ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆13Sep 7, 2021Updated 4 years ago
- View connectomic data stored in neuPrint☆28Jul 15, 2026Updated last week
- A deep learning based method to uncover brain learning rules from behavior or neural experimental data.☆18Dec 18, 2024Updated last year
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neuron…☆77Jun 12, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- ☆26Feb 12, 2026Updated 5 months ago
- This repository describes how to access the fly connectome from FlyWire.☆21Apr 9, 2024Updated 2 years ago
- ☆33Jul 8, 2026Updated 2 weeks ago
- Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")☆66Aug 16, 2024Updated last year
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆35Mar 22, 2026Updated 4 months ago
- 1d plotting in napari-based canvas.☆25Updated this week
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆45Jul 28, 2025Updated 11 months ago
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Segmentation of anatomical structures in a common coordinate space☆36Jul 14, 2026Updated last week
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.☆17Feb 3, 2026Updated 5 months ago
- ☆11Jul 2, 2026Updated 3 weeks ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 4 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week