navis-org / navis
Python library for analysis of neuroanatomical data.
☆95Updated last month
Alternatives and similar repositories for navis:
Users that are interested in navis are comparing it to the libraries listed below
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆13Updated 3 weeks ago
- A Python interface to access neuroanatomical atlases☆147Updated this week
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆27Updated last week
- ☆36Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆23Updated last week
- Exports 3D structure and activity from NEURON simulator to Blender☆29Updated 7 months ago
- Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.☆33Updated 4 months ago
- ☆40Updated 9 months ago
- Neuronal Morphology Analysis Tool☆105Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆48Updated 2 weeks ago
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…☆134Updated 3 months ago
- A python package for the topological analysis of neurons.☆28Updated 2 months ago
- A modular package to control stimulation and track behaviour☆44Updated 6 months ago
- Read and write Neuroglancer datasets programmatically.☆146Updated this week
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆37Updated 11 months ago
- Python client utilties for interacting with the neuPrint connectome analysis service☆32Updated 3 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆32Updated this week
- TREES toolbox☆28Updated 2 weeks ago
- A Python API for working with Neurodata stored in the NWB Format☆194Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆24Updated last month
- A python and C++ library for reading and writing neuronal morphologies☆28Updated 2 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated last week
- Conversion of neuroimaging data for display in Neuroglancer☆27Updated 5 months ago
- Electrophys Feature Extraction Library☆71Updated 2 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 10 months ago
- Collaboration between BBP and AIBS☆58Updated 9 months ago