kpatel427 / multiome_analysisLinks
Scripts for sincle cell multiome analysis
☆14Updated 3 years ago
Alternatives and similar repositories for multiome_analysis
Users that are interested in multiome_analysis are comparing it to the libraries listed below
Sorting:
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆110Updated 2 years ago
- published papers with a lot of data☆74Updated 7 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆87Updated 2 months ago
- R package to access DoRothEA's regulons☆152Updated last year
- A docker image for single-cell analysis☆95Updated 2 weeks ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- ☆73Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last month
- ☆32Updated last year
- Immunology-related bioinformatics data and tools☆75Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆25Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last week
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆31Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆173Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 3 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Updated last year
- Tabula Muris Senis☆107Updated 2 years ago
- ☆76Updated last year
- Spatial transcriptomics of heart tissue☆97Updated 2 years ago
- Using TCR and expression for sequence embedding☆60Updated 2 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆83Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated last week
- My youtube programming scripts☆58Updated 9 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 9 months ago