bigbioinformatics / single_cell_rna_seq_workshopLinks
repository for the single cell RNA-Seq workshop
☆30Updated 4 years ago
Alternatives and similar repositories for single_cell_rna_seq_workshop
Users that are interested in single_cell_rna_seq_workshop are comparing it to the libraries listed below
Sorting:
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆55Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- GLASS consortium☆40Updated 5 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆16Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- Personal notes about work- and coding-related topics☆20Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆47Updated 7 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago
- ☆30Updated 7 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 7 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆77Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago