bigbioinformatics / single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
☆25Updated 3 years ago
Related projects: ⓘ
- R/Bioconductor package for working with 10x scATACseq data☆38Updated 10 months ago
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆20Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆36Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 3 months ago
- Workshop • Analysis of RNA-seq data☆33Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆25Updated 2 years ago
- ☆25Updated 3 years ago
- ☆25Updated 10 months ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- ☆25Updated 3 weeks ago
- scRNA multimodal analysis pipeline utilised for large dataset processing☆14Updated 2 weeks ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆18Updated 2 months ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆53Updated last week
- workshop website on readthedocs☆17Updated this week
- ☆29Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆23Updated last year
- comprehensive analysis of single-cell transcriptomics data☆19Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- ☆12Updated 4 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- ☆21Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- The R Bioconductor package for scMAGeCK.☆11Updated 5 months ago
- Docker container for genomics analyses in R.☆24Updated 4 months ago