bigbioinformatics / single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
☆27Updated 3 years ago
Alternatives and similar repositories for single_cell_rna_seq_workshop:
Users that are interested in single_cell_rna_seq_workshop are comparing it to the libraries listed below
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- workshop website on readthedocs☆19Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆53Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆29Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Course Materials for Genomics Data Mining☆22Updated last month
- ☆27Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- scWGCNA☆58Updated 2 years ago
- ☆30Updated 2 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Identify and correct invalid gene symbols☆59Updated 4 months ago