bigbioinformatics / single_cell_rna_seq_workshop
repository for the single cell RNA-Seq workshop
☆27Updated 3 years ago
Alternatives and similar repositories for single_cell_rna_seq_workshop:
Users that are interested in single_cell_rna_seq_workshop are comparing it to the libraries listed below
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- ☆53Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 11 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Workshop • Analysis of RNA-seq data☆35Updated 11 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆22Updated 5 years ago
- ☆29Updated 6 years ago
- ☆29Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆47Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Updated 3 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- 🧬 Gene analysis toolkit based on R☆55Updated last month
- ☆40Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 8 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆21Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago