AlexsLemonade / OpenScPCA-analysisLinks
An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
☆14Updated this week
Alternatives and similar repositories for OpenScPCA-analysis
Users that are interested in OpenScPCA-analysis are comparing it to the libraries listed below
Sorting:
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- iread☆25Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Accessing AlphaMissense Data Resources in R☆13Updated 2 months ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Updated 3 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 5 years ago
- Docker container for genomics analyses in R.☆26Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- Create QC and summary reports for Alevin output☆31Updated last week
- A snakemake pipeline for 10X genomics cellranger☆22Updated 3 months ago
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year
- Identify and correct invalid gene symbols☆62Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- ☆29Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last week
- Isoform-level functional RNA-Seq analysis 🧬☆36Updated 2 months ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆39Updated 3 weeks ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago