An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
☆16Sep 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for OpenScPCA-analysis
Users that are interested in OpenScPCA-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell RNA PolyA Site Discovery☆11Jul 27, 2026Updated 2 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- Single-cell analysis with non-negative matrix factorization☆50Jul 24, 2025Updated last year
- ☆16Apr 18, 2025Updated last year
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Open Pediatric Cancer Project, maintained at Children's National☆15Updated this week
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 4 years ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- ☆10Jul 10, 2024Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 7 months ago
- A simple example of parsing BAM files using htslib☆12Mar 22, 2016Updated 10 years ago
- ☆12Aug 20, 2024Updated 2 years ago
- A CLI app that provides functionality around the LifeOmic platform.☆21Sep 12, 2026Updated 3 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆113Sep 17, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- All documentation associated with bioinformatics tutorial on the Alpine cluster☆34Updated this week
- Critic markup filter for quarto☆38Sep 8, 2025Updated last year
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 7 years ago
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- ☆12May 12, 2023Updated 3 years ago
- From geospatial to spatial -omics☆105Sep 26, 2026Updated last week
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- ☆27Sep 17, 2026Updated 3 weeks ago
- This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…☆19Nov 20, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆21Jul 16, 2024Updated 2 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 20, 2026Updated 4 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Alternative splicing resource☆61Mar 31, 2018Updated 8 years ago
- ☆10Apr 30, 2019Updated 7 years ago
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- AirSend an app that uses Airplay2 conexion in Windows☆57Sep 29, 2026Updated last week
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆231Jul 13, 2026Updated 2 months ago
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- Framework for building R interfaces to shell commands☆17Oct 12, 2020Updated 5 years ago
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- ☆13Apr 24, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago