mckellardw / slide_snakeLinks
Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-read
☆11Updated 2 months ago
Alternatives and similar repositories for slide_snake
Users that are interested in slide_snake are comparing it to the libraries listed below
Sorting:
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated last week
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Updated this week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- binned motif enrichment analysis and visualisation☆45Updated last week
- ☆29Updated 2 years ago
- Identify and correct invalid gene symbols☆62Updated last year
- ☆42Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- An R interface to the MEME Suite☆54Updated last month
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated last year
- A snakemake pipeline for 10X genomics cellranger☆22Updated 3 months ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated 3 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆96Updated last week
- workshop website on readthedocs☆21Updated 4 months ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Create QC and summary reports for Alevin output☆31Updated last week
- A tidy interface for coverage analysis☆31Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year