NKI-GCF / XenofilteR
Filtering of PDX samples for mouse derived reads
☆26Updated 2 years ago
Alternatives and similar repositories for XenofilteR:
Users that are interested in XenofilteR are comparing it to the libraries listed below
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆37Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆18Updated 4 years ago
- An R package to time somatic mutations☆60Updated 4 years ago
- ☆13Updated 7 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆17Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month
- RNA editing tests☆16Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- ☆47Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- workshop website on readthedocs☆19Updated 2 months ago