NKI-GCF / XenofilteRLinks
Filtering of PDX samples for mouse derived reads
☆28Updated 3 years ago
Alternatives and similar repositories for XenofilteR
Users that are interested in XenofilteR are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆41Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- GLASS consortium☆42Updated 5 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆35Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆48Updated 11 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆41Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago