Alternatives and similar repositories for XenofilteR:

Users that are interested in XenofilteR are comparing it to the libraries listed below

• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆33Updated 6 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆25Updated last year
• fpbarthel / GLASS
  GLASS consortium
  ☆39Updated 4 years ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated 2 months ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆70Updated 11 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆29Updated 2 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆61Updated 4 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆28Updated 2 months ago
• aryeelab / bisulfite-seq-tools
  Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…
  ☆19Updated 4 years ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated last month
• broadinstitute / RNA_MUTECT_1.0-1
  ☆38Updated 5 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 6 years ago
• kundajelab / ataqc
  ☆16Updated 6 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 3 months ago
• broadinstitute / gistic2
  Genomic Identification of Significant Targets in Cancer (GISTIC), version 2
  ☆51Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated 8 months ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated 10 months ago