Alternatives and similar repositories for TF-GenomicSelection

Users that are interested in TF-GenomicSelection are comparing it to the libraries listed below

• aldro61 / kover
  Learn interpretable computational phenotyping models from k-merized genomic data
  ☆52Updated 3 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆42Updated 3 months ago
• PMBio / warpedLMM
  ☆21Updated 10 years ago
• david-r-cox / Gene2vec
  Vector space representation of genetic data
  ☆36Updated 9 years ago
• mgalardini / python_plotting_snippets
  Tips and tricks for plotting in python
  ☆28Updated 7 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• broadinstitute / dsde-deep-learning
  DSDE Deep Learning Club
  ☆40Updated 6 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆31Updated 8 years ago
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 7 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• greenelab / adage
  Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …
  ☆61Updated 9 years ago
• quinlan-lab / mendelianerror
  probability of mendelian error in trios.
  ☆11Updated 9 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• uci-cbcl / DeepCons
  Understanding sequence conservation with deep learning
  ☆20Updated 8 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• BenLangmead / seq-frontiers-class
  Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class
  ☆25Updated 11 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 9 years ago
• diazale / 1KGP_dimred
  Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
  ☆20Updated 5 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• pimentel / deep_learning_papers
  A place to collect papers that are related to deep learning and computational biology
  ☆188Updated 9 years ago
• greenelab / DAPS
  Denoising Autoencoders for Phenotype Stratification
  ☆42Updated 7 years ago
• olgabot / kvector
  kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths
  ☆10Updated 8 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• davetang / learning_random_forest
  Notes and code for learning Random Forests
  ☆12Updated 3 years ago
• JasonJWilliamsNY / 2018_nih_datascience_rfi
  This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science
  ☆16Updated 7 years ago