azodichr / ML-PipelineView external linksLinks
Shiu Lab code base for Machine Learning implemented in SciKit-Learn
☆13Oct 5, 2021Updated 4 years ago
Alternatives and similar repositories for ML-Pipeline
Users that are interested in ML-Pipeline are comparing it to the libraries listed below
Sorting:
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn☆27May 7, 2024Updated last year
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- my code from working through Zed Shaw's book☆14May 5, 2016Updated 9 years ago
- ☆13Oct 15, 2024Updated last year
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 4 years ago
- Collection of utilities for working with BigQuery in Apache Beam☆10Nov 13, 2025Updated 3 months ago
- ☆14Oct 27, 2025Updated 3 months ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated last year
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- ☆11Aug 20, 2019Updated 6 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- a short graduate population biology course☆12Feb 22, 2023Updated 2 years ago
- ☆11Mar 4, 2025Updated 11 months ago
- This is a tutorial of using Kubeflow to build model, train model and deploy model serving.☆14Nov 22, 2022Updated 3 years ago
- A website to predict phenotypes of soybean by uploading .vcf files.☆16Mar 13, 2024Updated last year
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- ☆10Sep 4, 2024Updated last year
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- Complete Python Web Developer Course: First program (age in seconds)☆12Apr 18, 2020Updated 5 years ago
- ☆11Dec 26, 2022Updated 3 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- ☆11Jan 31, 2018Updated 8 years ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 2 months ago
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 5 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated 2 weeks ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 4 months ago
- ☆14Jul 6, 2025Updated 7 months ago
- ☆12Aug 6, 2020Updated 5 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Mar 14, 2022Updated 3 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 5 years ago