Alternatives and similar repositories for SpliceTransformer

Users that are interested in SpliceTransformer are comparing it to the libraries listed below

• johli / aparent
  APA Regression Net - Predict and Engineer Alternative Polyadenylation
  ☆40Updated 4 years ago
• Illumina / PromoterAI
  ☆87Updated 2 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆89Updated 3 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 10 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆46Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated last week
• xiongxslab / Translatomer
  ☆25Updated 4 months ago
• mhorlacher / rbpnet
  ☆19Updated last year
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆111Updated 3 years ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 11 months ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 10 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated 2 weeks ago
• lcamillo / CpGPT
  CpGPT: a Foundation Model for DNA Methylation.
  ☆64Updated last month
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆123Updated 4 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆100Updated 5 months ago
• frankligy / SNAF
  Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…
  ☆52Updated 11 months ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 2 weeks ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆34Updated 6 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆34Updated last year
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆38Updated 10 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• mostafavilabuw / EnformerAssessment
  ☆25Updated last year
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆92Updated 2 months ago