SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
☆35Nov 22, 2024Updated last year
Alternatives and similar repositories for SpliceTransformer
Users that are interested in SpliceTransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboNN: predicting translation efficiencies from mRNA sequences☆63Jan 12, 2026Updated 7 months ago
- ☆21Jul 28, 2025Updated last year
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆12Jul 7, 2026Updated last month
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆20Oct 26, 2024Updated last year
- Collection of mRNA benchmarks☆53Aug 1, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- ☆30Sep 9, 2025Updated 11 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 7 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Processing the DisGeNET database of disease–gene association☆25Mar 26, 2016Updated 10 years ago
- Interpretable, protein structure-based prediction of missense variant deleteriousness.☆23Aug 6, 2025Updated last year
- ☆17Jun 22, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Nov 13, 2023Updated 2 years ago
- Accompanying code for the ProteinGLUE method☆13Apr 12, 2022Updated 4 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 2 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Nov 9, 2024Updated last year
- Primary RNA sequence model☆42May 20, 2024Updated 2 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- ☆36Jan 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VEP Plugin to annotate high-impact five prime UTR variants☆30Aug 23, 2024Updated last year
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆12Jul 13, 2025Updated last year
- DECODE☆50Apr 3, 2026Updated 4 months ago
- tg fitness tracking bot☆15Jan 14, 2026Updated 6 months ago
- The implementation of paper "HPOFiller: identifying missing protein-phenotype associations by graph convolutional network".☆12Dec 24, 2020Updated 5 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Jul 22, 2026Updated 3 weeks ago
- Convert TCR gene names☆15Dec 26, 2025Updated 7 months ago
- ☆14May 14, 2025Updated last year
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Jul 28, 2026Updated 2 weeks ago
- ☆17Jan 13, 2025Updated last year
- ☆17Oct 17, 2024Updated last year
- Workflow and script for converting genomic coordinates using MUMmer output and CrossMap☆12Jun 15, 2026Updated last month
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated 2 years ago
- Hi-C data super-resolution with generative adversarial networks☆15Jul 6, 2021Updated 5 years ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago