SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
☆33Nov 22, 2024Updated last year
Alternatives and similar repositories for SpliceTransformer
Users that are interested in SpliceTransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboNN: predicting translation efficiencies from mRNA sequences☆58Jan 12, 2026Updated 4 months ago
- ☆17Jun 22, 2024Updated last year
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆19Oct 26, 2024Updated last year
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated last month
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Accompanying code for the ProteinGLUE method☆12Apr 12, 2022Updated 4 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Bioinformatics tools for Python☆25Feb 11, 2026Updated 3 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Nov 9, 2024Updated last year
- Primary RNA sequence model☆42May 20, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆59Oct 8, 2024Updated last year
- VEP Plugin to annotate high-impact five prime UTR variants☆29Aug 23, 2024Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Jun 3, 2026Updated last week
- ☆17May 22, 2026Updated 2 weeks ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jul 29, 2024Updated last year
- Workflow and script for converting genomic coordinates using MUMmer output and CrossMap☆12Sep 1, 2018Updated 7 years ago
- ☆14May 14, 2025Updated last year
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 2 weeks ago
- ☆18Jan 13, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scalable genomic analysis pipelines, written in WDL☆12Jun 2, 2026Updated last week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆76Nov 4, 2025Updated 7 months ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Jun 2, 2026Updated last week
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated last year
- ☆16Oct 17, 2024Updated last year
- ☆18May 31, 2024Updated 2 years ago
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- ☆17Mar 26, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hi-C data super-resolution with generative adversarial networks☆15Jul 6, 2021Updated 4 years ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 7 months ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆17Oct 16, 2025Updated 7 months ago
- Interpretable splicing model☆23Jun 14, 2023Updated 2 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- Collection of mRNA benchmarks☆52Mar 25, 2026Updated 2 months ago
- Convert TCR gene names☆15Dec 26, 2025Updated 5 months ago