Alternatives and similar repositories for MRAS

Users that are interested in MRAS are comparing it to the libraries listed below

• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆31Updated last year
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• YuLab-SMU / GeoTcgaData
  Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
  ☆28Updated 2 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 4 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆11Updated 2 years ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• nadavbra / pwas
  Proteome-Wide Association Study
  ☆50Updated 4 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆20Updated 4 months ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• LukszaLab / NeoantigenEditing
  ☆21Updated 3 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆25Updated 3 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆29Updated this week
• mhorlacher / rbpnet
  ☆18Updated last year
• zhuhr213 / HDRNet
  ☆13Updated last year
• menghaowei / Detect-seq
  An unbiased method for genome-wide CBE off-targets assessment
  ☆13Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• bm2-lab / pTuneos
  pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
  ☆37Updated 4 years ago
• Shamir-Lab / INTEND
  INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…
  ☆12Updated 2 years ago
• jasonHKU0907 / proteome-phenome-atlas
  ☆70Updated 9 months ago
• xiongxslab / Translatomer
  ☆24Updated 2 months ago
• bioinfo-biols / CIRIquant
  circular RNA quantification tools
  ☆31Updated last year
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• tatsuhikonaito / DEEP-HLA
  Upload test
  ☆22Updated last year
• yeee904 / RA_scRNA
  Rheumatoid Arthritis project. single cell RNA sequencing data.
  ☆14Updated 4 years ago