lehner-lab / DMS2structureLinks
Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
☆17Updated 6 years ago
Alternatives and similar repositories for DMS2structure
Users that are interested in DMS2structure are comparing it to the libraries listed below
Sorting:
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆31Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆52Updated 3 years ago
- Fast protein domain structure embedding+search tool☆26Updated last month
- Python package and command line tool for epitope prediction☆52Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 months ago
- HLA-I ligand predictor☆43Updated last month
- Code for LazyAF pipeline☆21Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆48Updated 6 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- ☆25Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- DeepECtransformer☆28Updated 2 years ago
- ☆23Updated 2 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Detection of remote homology by comparison of protein language model representations☆56Updated 10 months ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- ☆21Updated last month
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆35Updated 2 months ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆17Updated 3 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- ☆23Updated last month
- A package for making tree-based visualizations for embedding vectors☆10Updated 2 years ago