chenkenbio / SpliceBERT
Primary RNA sequence model
☆35Updated 10 months ago
Alternatives and similar repositories for SpliceBERT:
Users that are interested in SpliceBERT are comparing it to the libraries listed below
- Repository for mRNA Paper and CodonBERT publication.☆126Updated 9 months ago
- Protein language model trained on coding DNA☆46Updated 5 months ago
- RiboNucleic Acid (RNA) Language Model☆92Updated last week
- ☆25Updated 3 months ago
- ☆29Updated 2 years ago
- ☆78Updated 5 months ago
- ☆39Updated last year
- ☆51Updated last year
- ☆36Updated 2 months ago
- ☆71Updated last year
- ☆41Updated 3 years ago
- Contrastive learning harmonizing protein language models and natural language models☆30Updated 9 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆59Updated 2 months ago
- ☆66Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- ☆13Updated 2 years ago
- ☆67Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆42Updated last week
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 6 months ago
- RNA Multiple Sequence Alignment☆36Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆73Updated 3 months ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆31Updated 3 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- Neural networks for deep mutational scanning data☆68Updated 4 months ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆53Updated last month
- ☆104Updated last year
- ☆33Updated last week
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆57Updated 8 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆102Updated 7 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆57Updated 8 months ago