Primary RNA sequence model
β42May 20, 2024Updated 2 years ago
Alternatives and similar repositories for SpliceBERT
Users that are interested in SpliceBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π§ͺ Optimized protocol for m6A-SAC-seqβ13Jun 16, 2025Updated last year
- βοΈ Trim sequencing adapters from NGS data automaticallyβ14Sep 5, 2025Updated 10 months ago
- β17Jun 22, 2024Updated 2 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatioβ¦β12Nov 2, 2023Updated 2 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seqβ22Jul 22, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β19Mar 21, 2024Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)β386May 27, 2025Updated last year
- β14Jan 18, 2024Updated 2 years ago
- A deep learning-based tool to identify splice variantsβ506Apr 3, 2026Updated 3 months ago
- New computational framework to process and analyze KAS-seq and spKAS-seq data.β16Dec 5, 2023Updated 2 years ago
- Interpretable splicing modelβ23Jun 14, 2023Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)β69Apr 3, 2025Updated last year
- APA Regression Net - Predict and Engineer Alternative Polyadenylationβ43Oct 1, 2021Updated 4 years ago
- code and source data for de novo design of Kemp elimination paperβ26Sep 18, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elementsβ30Mar 13, 2025Updated last year
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Neβ¦β14Jul 16, 2025Updated last year
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genomeβ768Jan 22, 2026Updated 6 months ago
- This is the implementation of the 4th place solution (yu4u's part) for RSNA 2024 Lumbar Spine Degenerative Classification at Kaggle.β10Oct 11, 2024Updated last year
- RNA Multiple Sequence Alignmentβ53Jul 20, 2023Updated 3 years ago
- Code repository for paper "Generative artificial intelligence GPT-4 accelerates knowledge mining and machine learning for synthetic bioloβ¦β13May 14, 2023Updated 3 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.β20Mar 6, 2024Updated 2 years ago
- Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024β28May 27, 2025Updated last year
- Bi-Directional Equivariant Long-Range DNA Sequence Modelingβ249Mar 18, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)β62Jan 5, 2026Updated 6 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasksβ132Oct 31, 2024Updated last year
- RiboNucleic Acid (RNA) Language Modelβ169May 4, 2026Updated 2 months ago
- Foundation Models for Genomics & Transcriptomicsβ901Feb 24, 2026Updated 4 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matchingβ83Aug 11, 2024Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)β21Oct 7, 2021Updated 4 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequenceβ35Nov 22, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).β11Jul 20, 2025Updated last year
- Transposable Element Finder - Detection of active transposable elements from NGS dataβ10Apr 14, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Repositoryβ10Oct 23, 2024Updated last year
- β34Jun 9, 2026Updated last month
- Multi-task and masked language model-based protein sequence embedding models.β106Jun 16, 2021Updated 5 years ago
- Detection and couting alternative TSS in single cellsβ17Apr 21, 2024Updated 2 years ago
- RNA sequence design for a target protein sequenceβ13Jun 2, 2026Updated last month
- Process m6A/MeRIP-seq data in a single or batch job modeβ20Apr 28, 2020Updated 6 years ago
- β24Apr 15, 2024Updated 2 years ago