astrazeneca-cgr-publications / JARVIS
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
☆23Updated 3 months ago
Alternatives and similar repositories for JARVIS:
Users that are interested in JARVIS are comparing it to the libraries listed below
- ☆38Updated 7 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 10 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Explore the cancer relevance of your gene list☆51Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆34Updated 3 months ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated 8 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- ☆38Updated 5 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Updated 7 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 8 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 3 weeks ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- cfDNA analysis workflow☆21Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago