astrazeneca-cgr-publications / JARVISLinks
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
☆23Updated 6 months ago
Alternatives and similar repositories for JARVIS
Users that are interested in JARVIS are comparing it to the libraries listed below
Sorting:
- ☆39Updated last week
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 10 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- ☆42Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆21Updated 8 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- ☆33Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Genomic data interpretation and visualization Workshop☆21Updated last month
- Explore the cancer relevance of your gene list☆51Updated 4 months ago