kircherlab / CADD-SVLinks
CADD-SV – a framework to score the effect of structural variants
☆16Updated 7 months ago
Alternatives and similar repositories for CADD-SV
Users that are interested in CADD-SV are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆35Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- ☆35Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Population-wide Deletion Calling☆35Updated 6 months ago
- ☆22Updated 2 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last week
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Updated 3 years ago
- A variant caller for the GBA gene using WGS data☆23Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago