BennyStrobes / Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
☆18Updated 2 years ago
Alternatives and similar repositories for Watershed:
Users that are interested in Watershed are comparing it to the libraries listed below
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆27Updated this week
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- workshop website on readthedocs☆19Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 11 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆20Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆42Updated 2 weeks ago
- Explore and download data from the recount3 project☆34Updated 3 months ago
- ☆38Updated 6 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated 2 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 3 weeks ago
- GLASS consortium☆39Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago
- ☆33Updated 5 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- ☆38Updated 5 years ago