BennyStrobes / Watershed
Prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq
☆18Updated 2 years ago
Alternatives and similar repositories for Watershed:
Users that are interested in Watershed are comparing it to the libraries listed below
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- workshop website on readthedocs☆19Updated last month
- a set of NGS pipelines☆24Updated this week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆22Updated 2 weeks ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Explore and download data from the recount3 project☆31Updated last month
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated last week
- Lollipop-diagram to interactively visualize genetic mutations☆31Updated 4 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆64Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated 5 months ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 7 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆19Updated 7 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- ☆33Updated 4 months ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 9 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- ☆37Updated 4 years ago
- An R interface to the MEME Suite☆47Updated 3 months ago