BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactive and easy to digest format. This project was the People's Choice Award for the Vancouver Bioinformatics Hackathon Hackseq2019.
☆30Apr 4, 2021Updated 5 years ago
Alternatives and similar repositories for BiocSwirl
Users that are interested in BiocSwirl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Introductory Undergraduate course in Bioinformatics☆47Mar 2, 2021Updated 5 years ago
- Statistical and computational analysis of the human genome☆15Sep 22, 2021Updated 5 years ago
- Bioinformatics course (WSBIM1322)☆18Mar 31, 2026Updated 5 months ago
- ☆16Aug 10, 2026Updated last month
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Oct 21, 2022Updated 3 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 3 weeks ago
- Biopython Jupyter Notebook tutorial to characterize a small genome☆103Apr 8, 2020Updated 6 years ago
- Pipeline for demultiplexing and aligning both ATAC and RNA data generated in SHARE-seqV2☆18Apr 21, 2023Updated 3 years ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated last year
- A beginner-friendly framework for building fast interactive data analysis pipelines in R that scale.☆18Updated this week
- Template for building a bioconductor workshop package using github actions☆23Aug 5, 2026Updated last month
- online notebooks for a review of genome sketching☆60Sep 23, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Identify Organisms from a Stream of DNA Sequences☆13Mar 3, 2016Updated 10 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated 2 weeks ago
- Python Tools for the POP Metrics☆13Feb 16, 2022Updated 4 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 3 years ago
- ☆29Oct 3, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27Apr 17, 2019Updated 7 years ago
- Collection of Sphinx extensions similar to (but more flexible than) numpydoc☆12Updated this week
- Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)☆18May 29, 2020Updated 6 years ago
- Learn fundamentals of scientific computing for biochemistry using Jupyter notebooks in Python☆17Dec 2, 2025Updated 9 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- CRAN Package For Managing Bioconductor Packages☆76Jul 30, 2026Updated last month
- ☆18Jul 9, 2018Updated 8 years ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Dec 2, 2020Updated 5 years ago
- Calling R from Go and a better cli for the R console (WIP, nothing is working now)☆14Aug 19, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Sep 6, 2026Updated 2 weeks ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48May 18, 2017Updated 9 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆16Jan 11, 2024Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- UAB Research Computing Documentation☆24Sep 11, 2026Updated last week
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago