Alternatives and similar repositories for RNA-m5C

Users that are interested in RNA-m5C are comparing it to the libraries listed below

• liucongcas / GLORI-tools

  View on GitHub
  bioinformatic pipeline for GLORI
  ☆22May 19, 2024Updated last year
• y9c / pseudoU-BIDseq

  View on GitHub
  🧪 Pipeline for detecting Ψ modification
  ☆20May 8, 2024Updated last year
• ChongJenniferZhang / CLCA_WGS

  View on GitHub
  ☆28Sep 20, 2023Updated 2 years ago
• BovReg / BovReg_eQTL

  View on GitHub
  Repository
  ☆10Oct 23, 2024Updated last year
• VCCRI / Falco

  View on GitHub
  A quick and flexible single-cell RNA-seq processing framework on the cloud
  ☆39Dec 11, 2019Updated 6 years ago
• Ruitulyu / KAS-Analyzer

  View on GitHub
  New computational framework to process and analyze KAS-seq and spKAS-seq data.
  ☆15Dec 5, 2023Updated 2 years ago
• bartongroup / yanocomp

  View on GitHub
  Yet another nanopore modification comparison tool
  ☆12Mar 4, 2022Updated 3 years ago
• bartongroup / differr_nanopore_DRS

  View on GitHub
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Nov 27, 2020Updated 5 years ago
• zhongzhd / ont_m6a_detection

  View on GitHub
  ☆10Mar 11, 2025Updated 11 months ago
• nf-core / methylong

  View on GitHub
  Extract methylation calls from long reads (ONT/ PacBio)
  ☆20Dec 19, 2025Updated last month
• y9c / m6A-SACseq

  View on GitHub
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Jun 16, 2025Updated 8 months ago
• lbcb-sci / rockfish

  View on GitHub
  ☆12Nov 18, 2024Updated last year
• sdjebali / MakeGencodeTSS

  View on GitHub
  Makes distinct TSS of each gene from a Gencode annotation
  ☆10Oct 19, 2016Updated 9 years ago
• RJWANGbioinfo / APAlyzer

  View on GitHub
  APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…
  ☆12Dec 2, 2024Updated last year
• icthrm / cwSDTWnano

  View on GitHub
  Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…
  ☆10Jul 13, 2020Updated 5 years ago
• JiejunShi / BASAL

  View on GitHub
  Base-conversion Sequencing Aligner
  ☆14Nov 8, 2025Updated 3 months ago
• hiruna72 / slow5-dorado

  View on GitHub
  fork of dorado that supports S/BLOW5
  ☆12Jan 8, 2026Updated last month
• mflamand / Bullseye

  View on GitHub
  Bullseye analysis pipeline for DART-seq analysis
  ☆15Jul 8, 2025Updated 7 months ago
• SidhuK / dataviz

  View on GitHub
  My contributions to the weekly tidytuesday datasets and other data visualizations Made entirely using R (RLang).
  ☆15Jan 19, 2023Updated 3 years ago
• a-slide / NanopolishComp

  View on GitHub
  NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
  ☆10Dec 22, 2020Updated 5 years ago
• rnajena / read5

  View on GitHub
  Wrapper to read fast5, slow5, blow5 and pod5 files.
  ☆13Mar 26, 2025Updated 10 months ago
• comprna / radian

  View on GitHub
  Nanopore direct RNA basecaller
  ☆11Oct 27, 2022Updated 3 years ago
• xieyy46 / SingleMod-v1

  View on GitHub
  ☆13Jun 10, 2025Updated 8 months ago
• lrsoenksen / CL_RNA_SynthBio

  View on GitHub
  Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology
  ☆14May 1, 2023Updated 2 years ago
• y9c / cutseq

  View on GitHub
  ✂️ Trim sequencing adapters from NGS data automatically
  ☆14Sep 5, 2025Updated 5 months ago
• YingDings / Introgression-Detection-Methods

  View on GitHub
  ☆12Jun 12, 2023Updated 2 years ago
• hyulab / PINTS

  View on GitHub
  ☆14Jun 3, 2025Updated 8 months ago
• mattjones315 / KPTracer-release

  View on GitHub
  Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
  ☆14May 27, 2023Updated 2 years ago
• nanoporetech / pomfret

  View on GitHub
  ☆27Nov 14, 2025Updated 3 months ago
• shenorrLabTRDF / TimeAx

  View on GitHub
  Multiple trajectory alignment of time-series data
  ☆13Oct 14, 2023Updated 2 years ago
• awjga / PORE-cupine

  View on GitHub
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Jul 2, 2023Updated 2 years ago
• lrslab / nanoCEM

  View on GitHub
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆17Oct 13, 2025Updated 4 months ago
• sihaohuanguc / NanoSPA

  View on GitHub
  ☆14Oct 5, 2023Updated 2 years ago
• BonsonW / slorado

  View on GitHub
  A simplified version of Dorado built on top of S/BLOW5 format.
  ☆31Updated this week
• thackl / detectEVE

  View on GitHub
  Find endogenous viral elements in genomes
  ☆21Sep 24, 2025Updated 4 months ago
• yulab2021 / TandemMod

  View on GitHub
  ☆18Mar 31, 2025Updated 10 months ago
• YeoLab / gscripts

  View on GitHub
  General Use Scripts and Helper functions
  ☆16Mar 29, 2018Updated 7 years ago
• AngelCampos / txtools

  View on GitHub
  An R package to process and analyze transcriptomic data
  ☆19Jun 18, 2025Updated 7 months ago
• hasindu2008 / sigtk

  View on GitHub
  A simple toolkit for manipulating nanopore signal data
  ☆19Sep 24, 2024Updated last year