y9c / cutseqLinks
✂️ Trim sequencing adapters from NGS data automatically
☆14Updated 5 months ago
Alternatives and similar repositories for cutseq
Users that are interested in cutseq are comparing it to the libraries listed below
Sorting:
- A neural network model to predict splice site usage and splicing-altering mutations☆15Updated 6 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- An R package to process and analyze transcriptomic data☆19Updated 7 months ago
- 🧪 Optimized protocol for m6A-SAC-seq☆11Updated 7 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Updated last year
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Updated 7 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Updated 7 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- ☆39Updated 7 months ago
- simplified cellranger for long-read data☆19Updated 5 months ago
- pathway based data integration and visualization☆46Updated 10 months ago
- Long read to rMATS☆32Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆82Updated last year
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Updated 7 years ago
- ☆17Updated 7 months ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 3 weeks ago
- Somatic point mutation caller☆17Updated 9 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago