nf-core / methylongLinks
Extract methylation calls from long reads (ONT/ PacBio)
☆19Updated last month
Alternatives and similar repositories for methylong
Users that are interested in methylong are comparing it to the libraries listed below
Sorting:
- ☆22Updated last year
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- Filter SAM file for soft and hard clipped alignments☆53Updated 3 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- Simple pileup-based variant caller☆95Updated 9 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Updated 5 months ago
- BigWig and BAM utilities☆102Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆93Updated 2 weeks ago
- Simulation toolbox for structural variations.☆10Updated 6 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- ☆52Updated 4 months ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated 2 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- a lexicographically-based GTF/GFF sorter☆37Updated 9 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Evolutionary Transcriptomics with R☆47Updated last week
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆20Updated last year
- ☆27Updated 9 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Conditional Reciprocal Best Blast☆43Updated 8 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆69Updated 2 months ago