APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach is the comparison of sequencing reads in regions demarcated by high-quality polyadenylation sites (PASs) annotated in the PolyA_DB database (https://exon.apps.wistar.org/PolyA_DB/v3/). The current version (v3.…
☆14Apr 5, 2026Updated 7 months ago
Alternatives and similar repositories for APAlyzer
Users that are interested in APAlyzer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- ☆20Sep 28, 2019Updated 7 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆21Feb 7, 2018Updated 8 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- snakemake-based workflows☆12Jul 20, 2022Updated 4 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Single Cell Alternative Polyadenylation using Expectation-maximization☆11Mar 15, 2024Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 9 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆69Sep 12, 2023Updated 3 years ago
- ☆18Sep 16, 2026Updated last month
- ✂️ Trim sequencing adapters from NGS data automatically☆14Oct 12, 2026Updated 3 weeks ago
- polyApipe☆25Feb 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jun 27, 2024Updated 2 years ago
- New version of JACUSA -> 2.0☆32Jun 2, 2026Updated 5 months ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 4 years ago
- ☆21Aug 26, 2024Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆17Sep 23, 2026Updated last month
- ☆13Oct 5, 2023Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- bioinformatic pipeline for GLORI☆27Mar 30, 2026Updated 7 months ago
- R interface to genome annotation files and the UCSC genome browser☆37Oct 9, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The analysis pipeline for FLEP-seq☆19Aug 18, 2023Updated 3 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Oct 16, 2026Updated 3 weeks ago
- RNA Secondary Structure Prediction☆11Oct 26, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- CapR calculates probabilities that each RNA base position is located within each secondary structural context for long RNA sequences.☆10Oct 10, 2020Updated 6 years ago
- 🧪 Pipeline for detecting Ψ modification☆23May 8, 2024Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year
- Improved and linear-time stochastic sampling algorithm for RNA secondary structures☆11Jan 30, 2024Updated 2 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆14Sep 3, 2019Updated 7 years ago
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆17Jul 7, 2023Updated 3 years ago