RJWANGbioinfo / APAlyzerLinks
APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach is the comparison of sequencing reads in regions demarcated by high-quality polyadenylation sites (PASs) annotated in the PolyA_DB database (https://exon.apps.wistar.org/PolyA_DB/v3/). The current version (v3.…
☆12Updated last year
Alternatives and similar repositories for APAlyzer
Users that are interested in APAlyzer are comparing it to the libraries listed below
Sorting:
- ☆27Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated 4 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- ☆34Updated 2 months ago
- Extract Sequence from Genome According to Annotation File☆39Updated 9 months ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Updated 5 years ago
- ☆23Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Detection and couting alternative TSS in single cells☆16Updated last year
- ☆22Updated 3 years ago
- ☆17Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- ☆20Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Tutorial Website☆63Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- RNA editing tests☆17Updated 5 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 6 months ago
- ☆15Updated 3 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- binned motif enrichment analysis and visualisation☆44Updated this week
- direct comparison of circular and linear RNA expression☆23Updated 5 years ago