New computational framework to process and analyze KAS-seq and spKAS-seq data.
β15Dec 5, 2023Updated 2 years ago
Alternatives and similar repositories for KAS-Analyzer
Users that are interested in KAS-Analyzer are comparing it to the libraries listed below
Sorting:
- π§ͺ Optimized protocol for m6A-SAC-seqβ11Jun 16, 2025Updated 8 months ago
- βοΈ Trim sequencing adapters from NGS data automaticallyβ14Sep 5, 2025Updated 5 months ago
- General Use Scripts and Helper functionsβ16Mar 29, 2018Updated 7 years ago
- π§ͺ Pipeline for detecting Ξ¨ modificationβ20May 8, 2024Updated last year
- The project for analyzing differential methylation of MeRIP-seq dataβ24Sep 5, 2023Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job modeβ21Apr 28, 2020Updated 5 years ago
- A machine learning tool to predict tandem repeat pathogenicityβ12Jan 2, 2024Updated 2 years ago
- Repositoryβ10Oct 23, 2024Updated last year
- Classifier of pathogenic non-coding variants in Mendelian diseasesβ10Feb 6, 2020Updated 6 years ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategyβ12Aug 23, 2022Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.β43Feb 25, 2026Updated last week
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironmentβ¦β12Dec 4, 2023Updated 2 years ago
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics dataβ10Feb 23, 2026Updated last week
- β10Jul 9, 2024Updated last year
- β10Jan 21, 2023Updated 3 years ago
- β15May 22, 2025Updated 9 months ago
- β12Jan 31, 2023Updated 3 years ago
- Higher-Order Co-occurrenceβ12Nov 9, 2021Updated 4 years ago
- Primary RNA sequence modelβ42May 20, 2024Updated last year
- A customizable genetic variants file format converter.β11Oct 7, 2025Updated 4 months ago
- Skip the peaks and expose RNA-binding in CLIP dataβ10Jan 27, 2026Updated last month
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C dataβ10Oct 13, 2025Updated 4 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq dataβ16Sep 10, 2024Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer typesβ11Mar 4, 2025Updated 11 months ago
- a simple R data package for curated cancer pathway-specific gene listsβ13Mar 31, 2020Updated 5 years ago
- β11Aug 6, 2019Updated 6 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDSβ11Dec 27, 2024Updated last year
- π§ͺ Ultrafast bisulfiteβ38Apr 23, 2024Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and β¦β14Dec 5, 2025Updated 2 months ago
- β14Oct 24, 2025Updated 4 months ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.β10May 31, 2024Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"β12May 10, 2025Updated 9 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneityβ12Updated this week
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cellsβ¦β17Feb 20, 2026Updated last week
- Testing a neutral evolution model on cancer sequencing dataβ10Feb 17, 2021Updated 5 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptomeβ10Jan 25, 2019Updated 7 years ago
- β10Mar 25, 2025Updated 11 months ago
- β10Jun 5, 2021Updated 4 years ago
- simpler single cell RNAseq data Visualizationβ10Feb 28, 2025Updated last year