latendre / PythonCycLinks
☆22Updated 5 years ago
Alternatives and similar repositories for PythonCyc
Users that are interested in PythonCyc are comparing it to the libraries listed below
Sorting:
- ReFramed: metabolic modeling package☆61Updated last month
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- ☆14Updated 6 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- ☆24Updated last year
- A BioJS viewer for protein sequence features☆51Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆62Updated 8 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- A collection of M models downloaded from published studies☆17Updated 9 years ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- Analysis of ensembles of metabolic network reconstructions☆21Updated last month
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- The BiGG Models website server☆84Updated 5 years ago
- A route planner for DNA assembly☆36Updated 5 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 5 months ago
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- An automated model test system for synthetic biology models of gene expression and regulation.☆15Updated 5 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs☆54Updated last year
- A Pure-Python parser of HMMER3 output☆18Updated last year
- Parse GFF3 into Pandas dataframes☆30Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆42Updated this week
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago