latendre / PythonCyc
☆22Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for PythonCyc
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆26Updated last year
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆34Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆39Updated last month
- D3.js based visualizations of cobrapy metabolic models☆41Updated 4 years ago
- ReFramed: metabolic modeling package☆56Updated 3 months ago
- Enzyme-constrained genome-scale models in python☆25Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆13Updated 3 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆18Updated 6 months ago
- Python package to study microbial communities using metabolic modeling.☆94Updated this week
- A collection of M models downloaded from published studies☆15Updated 8 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆16Updated 6 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆57Updated last month
- Python Implementation of Codon Adaption Index☆34Updated last year
- Python package for building and analyzing models using ModelSEED☆19Updated 2 weeks ago
- A Pure-Python parser of HMMER3 output☆17Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆67Updated last month
- Dynamic FBA for use with COBRApy metabolic models☆10Updated last year
- Automated taxonomy decoration onto a tree☆15Updated last year
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆17Updated this week
- Computation of Microbial Ecosystems in Time and Space☆19Updated 2 weeks ago
- ☆21Updated last month
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆51Updated last year
- A Practical Introduction to Reproducible Computational Workflows (ISMB/ECCB 2019 Tutorial AM4)☆33Updated 5 years ago
- framed: a metabolic modeling package for python☆25Updated 5 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆25Updated 5 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆24Updated 7 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆11Updated 11 months ago
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆20Updated 3 years ago
- Nanopore Plasmid Sequencing☆30Updated last year