☆23Aug 28, 2020Updated 6 years ago
Alternatives and similar repositories for PythonCyc
Users that are interested in PythonCyc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- Constraint-based modeling framework for the enumeration of pathway analysis concepts☆14Jul 6, 2023Updated 3 years ago
- cameo - computer aided metabolic engineering & optimization☆128Nov 7, 2022Updated 3 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 9 years ago
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated 2 years ago
- ☆24Oct 11, 2024Updated last year
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Dec 10, 2018Updated 7 years ago
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- Searching large collections of sequencing data with genome-scale queries☆19Aug 3, 2026Updated 3 weeks ago
- ☆15Dec 26, 2022Updated 3 years ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated 3 months ago
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆237May 12, 2026Updated 3 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Nov 10, 2025Updated 9 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated 2 months ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆53Aug 23, 2026Updated last week
- A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…☆16Jul 29, 2026Updated last month
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 8 months ago
- pykpp is a KPP-like chemical mechanism parser that produces a box model solvable by SciPy's odeint solver☆19May 9, 2025Updated last year
- Template for building a bioconductor workshop package using github actions☆23Aug 5, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 3 months ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- ☆24Dec 7, 2023Updated 2 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- memote – the genome-scale metabolic model test suite☆151Aug 14, 2025Updated last year
- Python Environment for Reaction Mechanisms/Mathematics provides dynamic analysis tools for evaluating chemical networks easily.☆19Nov 27, 2020Updated 5 years ago