Alternatives and similar repositories for psamm

Users that are interested in psamm are comparing it to the libraries listed below

• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆23Updated last week
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 9 months ago
• latendre / PythonCyc
  ☆23Updated 5 years ago
• SBRG / cobradb
  COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…
  ☆20Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• opencobra / m_model_collection
  A collection of M models downloaded from published studies
  ☆17Updated 9 years ago
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 7 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆121Updated 3 years ago
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆62Updated 2 months ago
• mmundy42 / mackinac
  Mackinac: A bridge between ModelSEED and COBRApy
  ☆19Updated 7 years ago
• ginkgobioworks / geckopy
  Enzyme-constrained genome-scale models in python
  ☆29Updated 2 years ago
• draeger-lab / EscherConverter
  A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard f…
  ☆16Updated 4 months ago
• BioSystemsUM / MEWpy
  Metabolic Engineering Workbench
  ☆40Updated last year
• mengqvist / DNApy
  Code for DNA plasmid editing.
  ☆43Updated 7 years ago
• ecocyc / PythonCyc
  ☆24Updated last year
• Edinburgh-Genome-Foundry / SBOL-Visual-CSS
  Draw genetic elements with HTML & CSS
  ☆16Updated 8 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 2 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• opencobra / Medusa
  Analysis of ensembles of metabolic network reconstructions
  ☆21Updated last month
• SystemsBioinformatics / cbmpy
  CBMPy is a Python based platform for constraint based modelling and analysis.
  ☆19Updated last year
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆128Updated 3 weeks ago
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Updated 3 years ago
• Edinburgh-Genome-Foundry / BandWagon
  🎺 Plot DNA digestion band patterns with Python
  ☆20Updated 6 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 6 years ago
• resendislab / corda
  An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
  ☆25Updated last year
• Edinburgh-Genome-Foundry / crazydoc
  Read DNA sequences from colourful Microsoft Word documents
  ☆34Updated 6 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated 2 weeks ago
• borenstein-lab / CoMiDA
  The code and distributable for designing minimal microbial communities with specified metabolic functions.
  ☆11Updated 8 years ago