A 3-Dimensional View of Human Metabolism and Disease
☆32Feb 28, 2018Updated 8 years ago
Alternatives and similar repositories for Recon3D
Users that are interested in Recon3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Jul 6, 2023Updated 2 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 3 years ago
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆15Jan 8, 2026Updated 3 months ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆18Mar 11, 2026Updated last month
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Feb 17, 2021Updated 5 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated last year
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆556Apr 8, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Mar 10, 2020Updated 6 years ago
- ☆17Jun 27, 2024Updated last year
- ☆26Dec 9, 2022Updated 3 years ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- Repository for mzML and the corresponding examples☆36Apr 5, 2024Updated 2 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 4 months ago
- This repository contains reference data from the Richardson Lab at Duke.☆15Jul 26, 2023Updated 2 years ago
- The java implementation of the MMTF API, decoder and encoder.☆11Dec 19, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Dec 10, 2018Updated 7 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated last week
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated last year
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- PKSmart: Predicting PK properties using Chemical Structures☆18Sep 26, 2025Updated 6 months ago
- NeST-VNN repo☆12Jun 13, 2025Updated 10 months ago
- Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia☆15May 16, 2024Updated last year
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 7 months ago
- Graph Neural Networks with Multiple Prior Knowledge for Multi-Omics Data Analysis☆11May 1, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 3 months ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆25Jul 15, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago
- Jupyter Notebook Extension that assists with notebook cleaning☆20Mar 14, 2018Updated 8 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 5 years ago