A 3-Dimensional View of Human Metabolism and Disease
☆33Feb 28, 2018Updated 8 years ago
Alternatives and similar repositories for Recon3D
Users that are interested in Recon3D are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The BiGG Models website server☆93Nov 7, 2019Updated 6 years ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆28Jul 6, 2023Updated 3 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆13Aug 1, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data☆18Feb 17, 2021Updated 5 years ago
- The generic genome-scale metabolic model of Homo sapiens☆174Updated this week
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆23May 27, 2021Updated 5 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Jul 30, 2026Updated 2 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆25Jan 23, 2026Updated 8 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆589Oct 7, 2026Updated last week
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- D3.js based visualizations of cobrapy metabolic models☆55Mar 10, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 8 years ago
- single cell Flux Estimation Analysis (scFEA)☆155Nov 10, 2023Updated 2 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- ☆27Dec 9, 2022Updated 3 years ago
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- Metadata model and schemas for the EJP virtual platform☆18Aug 29, 2024Updated 2 years ago
- Repository for mzML and the corresponding examples☆39Aug 12, 2026Updated 2 months ago
- The java implementation of the MMTF API, decoder and encoder.☆14Dec 19, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Dec 10, 2018Updated 7 years ago
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated 2 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Sep 18, 2026Updated 3 weeks ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆16Apr 15, 2026Updated 5 months ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Guidelines, templates and modeling patterns☆20Apr 13, 2026Updated 6 months ago
- ☆10Mar 6, 2023Updated 3 years ago
- Asynchronous job and file i/o management for containers☆15Dec 9, 2022Updated 3 years ago
- Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia☆15May 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆41Mar 23, 2023Updated 3 years ago
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 6 years ago
- The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:☆291Oct 7, 2026Updated last week
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 7 years ago
- Tools for building and manipulating graphs in Python☆46Dec 18, 2025Updated 9 months ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 6 months ago