Constraint-based modeling framework for the enumeration of pathway analysis concepts
☆14Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for cobamp
Users that are interested in cobamp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reconstruction algorithms for Python☆26Oct 23, 2024Updated last year
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16Updated this week
- framed: a metabolic modeling package for python☆26Nov 7, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics☆15Aug 13, 2025Updated 9 months ago
- ☆23Aug 28, 2020Updated 5 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- ReFramed: metabolic modeling package☆64May 4, 2026Updated last month
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 7 years ago
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Apr 23, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- Toolbox for including enzyme constraints on a genome-scale model.☆90May 29, 2026Updated last week
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆16May 14, 2023Updated 3 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆32Mar 5, 2019Updated 7 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆207Sep 12, 2025Updated 8 months ago
- Python library for attractor identification and control in Boolean networks☆31Sep 23, 2025Updated 8 months ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆10Jul 4, 2019Updated 6 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆126Nov 7, 2022Updated 3 years ago
- A Qiime plugin for MICOM.☆10May 26, 2026Updated 2 weeks ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- A utility framework for the management of genome-scale metabolic models.☆11Mar 28, 2020Updated 6 years ago
- COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is a…☆21Oct 29, 2019Updated 6 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 2 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Dec 10, 2018Updated 7 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- FromTo is a helper library that makes it simple to handle asynchronous actions with views for Android and Java/Kotlin.☆14Feb 25, 2016Updated 10 years ago
- Theses-Checker is a tool for students and teachers alike to check theses for frequent typographical errors and see content analysis for q…☆19Jun 3, 2026Updated last week
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 7 years ago
- Compress graphs☆12May 21, 2026Updated 2 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆70Mar 16, 2026Updated 2 months ago