ISA-tools / mzml2isa
Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
☆12Updated 8 months ago
Alternatives and similar repositories for mzml2isa:
Users that are interested in mzml2isa are comparing it to the libraries listed below
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Updated 6 years ago
- R interface to Chemical Translation Service (CTS)☆14Updated 9 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Updated 5 years ago
- Nextflow-powered MS-DIAL☆10Updated 3 months ago
- Core Utils for Mass Spectrometry Data☆17Updated last month
- Galaxy tools for metabolomics maintained by Workflow4Metabolomics☆27Updated 3 months ago
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox☆10Updated 2 months ago
- ☆21Updated 8 years ago
- A set of metabolomics tools for use in Galaxy☆11Updated 2 years ago
- Workflow4Metabolomics meta repository☆10Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆14Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 4 months ago
- Metabolomics Tools for Galaxy☆21Updated 8 years ago
- Connect the dots in networks.☆18Updated 4 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10Updated 7 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated last week
- Quickly find and score consensus between metabolite identifications and gene annotations☆17Updated 5 months ago
- ☆14Updated 2 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated this week
- Proteomics label-free quantification (LFQ) analysis pipeline☆36Updated 3 months ago
- A collection of functional and scientific icons for EMBL-EBI sites.☆17Updated 5 years ago
- ☆16Updated 11 months ago
- iDEP: integrated Differential Expression & Pathway analysis☆15Updated 6 years ago
- ☆11Updated 10 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 3 months ago
- ☆12Updated 2 weeks ago