Alternatives and similar repositories for brendapy:

Users that are interested in brendapy are comparing it to the libraries listed below

• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆52Updated 3 months ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆32Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated last year
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆27Updated 2 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 3 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆87Updated 6 months ago
• proteinphysiologylab / frustratometeR
  ☆34Updated 4 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆35Updated 11 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆21Updated last month
• Robaina / BRENDApyrser
  A Python parser for the BRENDA database
  ☆28Updated last year
• JBEI / foldy
  Foldy: a web-based platform for interactive protein structure analysis
  ☆21Updated this week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆81Updated 11 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆21Updated last week
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆26Updated 11 months ago
• djwooten / synergy
  Python library for calculting synergy of drug combinations using several drug synergy frameworks
  ☆35Updated 4 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 9 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆27Updated this week
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last month
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆41Updated 3 weeks ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆48Updated 2 months ago
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆34Updated 5 months ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆29Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆88Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆48Updated 4 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago