Alternatives and similar repositories for brendapy

Users that are interested in brendapy are comparing it to the libraries listed below

• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆30Updated 2 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆59Updated last month
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆58Updated 4 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆101Updated last month
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated last month
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆82Updated 5 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆91Updated last year
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆63Updated last year
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆52Updated last month
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆54Updated 7 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆62Updated 5 months ago
• Robaina / BRENDApyrser
  A Python parser for the BRENDA database
  ☆32Updated last year
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆57Updated 5 months ago
• ncbi / SSDraw
  ☆85Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆39Updated 2 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆104Updated 3 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆55Updated 2 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆68Updated 7 years ago
• proteinphysiologylab / frustratometeR
  ☆36Updated 2 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 8 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆112Updated 2 years ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆26Updated 5 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆53Updated 11 months ago
• Eryk96 / NetSurfP-3.0
  NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction
  ☆22Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated 2 weeks ago
• boscoh / pdbremix
  analyse PDB files, run molecular-dynamics & analyse trajectories
  ☆61Updated 7 years ago