matthiaskoenig / brendapy
BRENDA parser in python
☆21Updated 2 years ago
Alternatives and similar repositories for brendapy:
Users that are interested in brendapy are comparing it to the libraries listed below
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆32Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated 4 months ago
- A Python parser for the BRENDA database☆29Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆36Updated 11 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- ☆28Updated 11 months ago
- Python package to manage protein structures and their annotations☆42Updated last year
- ☆34Updated 6 months ago
- ☆10Updated last year
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆89Updated 6 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 3 months ago
- ☆34Updated 5 months ago
- Foldy: a web-based platform for interactive protein structure analysis☆22Updated 3 weeks ago
- Machine learning prediction of enzyme optimum pH☆29Updated 2 weeks ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆41Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- A domain parser for Alphafold models☆34Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- A Python platform for Structural Bioinformatics☆56Updated 2 weeks ago
- ☆20Updated 2 years ago
- Framework for the rapid modeling glycans and glycoproteins.☆29Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆15Updated 5 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆82Updated last year
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆23Updated 3 weeks ago
- Detection of remote homology by comparison of protein language model representations☆49Updated 3 months ago
- ☆24Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆16Updated last week