sanderlab / CellBoxLinks
CellBox: Interpretable Machine Learning for Perturbation Biology
☆56Updated 2 years ago
Alternatives and similar repositories for CellBox
Users that are interested in CellBox are comparing it to the libraries listed below
Sorting:
- Biological Network Integration using Convolutions☆62Updated last year
- ☆63Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆53Updated 4 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- ☆91Updated last week
- ☆56Updated last month
- Modeling complex perturbations with CellFlow☆95Updated last week
- Functional and Learnable Cell dynamicS☆19Updated 6 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆129Updated 9 months ago
- ☆58Updated 3 months ago
- ☆85Updated 2 years ago
- ☆37Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆118Updated last year
- Diffusion model for gene regulatory network inference.☆23Updated 3 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 10 months ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆30Updated 3 years ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- ☆86Updated last year
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated this week
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆69Updated last year
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆14Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Python client for the OmniPath web service☆53Updated 4 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Git Repo for simulating Boolean Models☆36Updated last week
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆153Updated this week
- spatial transcriptome, single cell☆71Updated 2 years ago