CellBox: Interpretable Machine Learning for Perturbation Biology
☆56Jul 27, 2023Updated 3 years ago
Alternatives and similar repositories for CellBox
Users that are interested in CellBox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Feb 24, 2020Updated 6 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆187Feb 25, 2025Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- ☆27Dec 9, 2022Updated 3 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Models and datasets for perturbational single-cell omics☆182Aug 19, 2022Updated 4 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 6 years ago
- Computational Biology- Spring 2021☆50Nov 1, 2021Updated 4 years ago
- ☆10Jul 3, 2018Updated 8 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- DCell browser and gene deletion simulator☆126Dec 14, 2022Updated 3 years ago
- Learning cell communication from spatial graphs of cells☆121Jan 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Causal and probabilistic reasoning with continuous time dynamical systems☆21Aug 29, 2025Updated last year
- Multi-Scale Integrated Cell☆36Aug 11, 2022Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆70Jul 8, 2025Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated last year
- ☆11Dec 8, 2023Updated 2 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Predicting transcription factor binding in single cells through deep learning☆14Oct 14, 2022Updated 3 years ago
- Jupyter notebook based multiplex image processing pipeline.☆10Jun 23, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆181Oct 31, 2024Updated last year
- ☆10Aug 5, 2021Updated 5 years ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated 2 years ago
- Single cell proteomics data processing☆33Updated this week
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆401Feb 1, 2025Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ARCHS4 RNA-seq processing scripts and web server pages.☆65Nov 26, 2020Updated 5 years ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆17Mar 3, 2023Updated 3 years ago
- Simple R client to UCSC Xena data hubs☆10Jun 1, 2015Updated 11 years ago
- A visible neural network model for drug response prediction☆155Sep 13, 2023Updated 2 years ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- This is the alpha version of the CellOracle package☆487Apr 30, 2026Updated 4 months ago
- ☆19May 5, 2021Updated 5 years ago