labsyspharm / visinity

Related projects ⓘ

Alternatives and complementary repositories for visinity

• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆48Updated last month
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆37Updated 2 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆23Updated this week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆21Updated last month
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated 5 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆54Updated this week
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆39Updated 4 months ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆41Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆39Updated 3 years ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆53Updated 11 months ago
• HiDiHlabs / ssam
  ☆28Updated 3 weeks ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆53Updated 3 weeks ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆38Updated last year
• scverse / spatialdata-notebooks
  ☆38Updated last week
• jlakkis / CarDEC
  ☆19Updated 3 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆39Updated last month
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated last year
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆33Updated last month
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆23Updated 2 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated last month
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆49Updated 5 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆45Updated this week
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆69Updated 3 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆52Updated 7 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆84Updated this week
• almaan / eggplant
  ☆20Updated 2 years ago