labsyspharm / visinity
☆16Updated 7 months ago
Alternatives and similar repositories for visinity:
Users that are interested in visinity are comparing it to the libraries listed below
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 3 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆31Updated this week
- Python client for the OmniPath web service☆43Updated 8 months ago
- Single-cell multi-omics integration using Optimal Transport☆41Updated 5 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆15Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Fit generalized linear models in python.☆27Updated last year
- MultiMAP for integration of single cell multi-omics☆54Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆24Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆51Updated 4 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆55Updated 10 months ago
- Regulatory networks with Direct Information in python☆40Updated last year
- Unified knowledge-driven network inference from omics data☆32Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- Multi-omics factor analysis v2☆40Updated 3 months ago
- Multimodal Data (.h5mu) implementation for Python☆87Updated last week
- ☆28Updated 4 years ago
- spatial transcriptome, single cell☆67Updated last year
- Single-cell Hierarchical Poisson Factorization☆67Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆106Updated 4 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆47Updated 7 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- ☆27Updated 4 months ago
- Spatial Transcriptomics Dashboard☆28Updated last year
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆20Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated last month
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago