labsyspharm / visinityLinks
☆17Updated last year
Alternatives and similar repositories for visinity
Users that are interested in visinity are comparing it to the libraries listed below
Sorting:
- Single-cell multi-omics integration using Optimal Transport☆47Updated 2 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆19Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- Conditional out-of-distribution prediction☆63Updated last year
- Learning cell communication from spatial graphs of cells☆113Updated last year
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- ☆69Updated 2 years ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆24Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 3 months ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- spatial transcriptome, single cell☆70Updated 2 years ago
- ☆13Updated 4 years ago
- ☆56Updated last year
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- ☆27Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- Tool to create images and configuration files for Minerva-Story☆16Updated 5 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Spatially aware dimension reduction for spatial transcriptomics.☆57Updated 7 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago