labsyspharm / visinity
☆16Updated 8 months ago
Alternatives and similar repositories for visinity:
Users that are interested in visinity are comparing it to the libraries listed below
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- Unified knowledge-driven network inference from omics data☆32Updated last week
- Single-cell multi-omics integration using Optimal Transport☆42Updated 6 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Python client for the OmniPath web service☆43Updated 2 weeks ago
- ☆21Updated 2 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Multi-omics factor analysis v2☆43Updated 5 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- ☆42Updated 4 months ago
- Spatial Transcriptomics Dashboard☆28Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated 11 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆45Updated 2 weeks ago
- Single-cell Hierarchical Poisson Factorization☆68Updated 2 years ago
- spatial transcriptome, single cell☆67Updated 2 years ago
- ☆25Updated 5 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Multiview Intercellular SpaTial modeling framework☆52Updated 11 months ago
- Geometry-preserving random sampling☆80Updated 4 months ago
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Updated 11 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated 8 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆48Updated 8 months ago