RuleWorld / bionetgenLinks
Rule-based modeling framework
☆65Updated 5 months ago
Alternatives and similar repositories for bionetgen
Users that are interested in bionetgen are comparing it to the libraries listed below
Sorting:
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆116Updated last week
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 3 months ago
- libRoadRunner: A high-performance SBML simulator☆52Updated 2 weeks ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 6 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- ☆25Updated 2 years ago
- Python utilities for SBML☆41Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 2 months ago
- Symbolic Kinetic Models with Python☆32Updated 4 months ago
- Python framework for Systems Biology modeling☆188Updated 3 months ago
- Release of the whole cell E. coli model.☆71Updated 10 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆36Updated 5 months ago
- The Integrative Modeling Platform☆77Updated last week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Whole Cell Model of E. coli☆29Updated this week
- Curation and analysis of metabolic models☆35Updated 2 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Updated last year
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆180Updated 8 months ago
- The official PySCeS project source code repository.☆39Updated last week
- ☆18Updated last week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆18Updated last year
- Virtual Cell Framework☆95Updated last week
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year