SystemsBioinformatics / stochpyLinks
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
☆41Updated last month
Alternatives and similar repositories for stochpy
Users that are interested in stochpy are comparing it to the libraries listed below
Sorting:
- Modeling toolkit for biochemical simulation☆75Updated 6 months ago
- Toolbox for non-linear calibration modeling.☆25Updated 8 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆124Updated this week
- Solve symbolically defined systems of non-linear equations numerically.☆52Updated last month
- Solve ODEs fast, with support for PyMC☆114Updated last year
- Design of Experiments in Python☆28Updated 4 years ago
- Notebook tutorials☆14Updated last year
- Exercises and notes for N.G. Van Kampen's Stochastic Processes in Physics and Chemistry☆37Updated last month
- pyrff: Python implementation of random fourier feature approximations for gaussian processes☆28Updated 2 weeks ago
- distributed, likelihood-free inference☆216Updated last month
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- Python routines for Monte Carlo integration. Written in Cython and Python for fast computations. @Naereen knows the installation is broke…☆32Updated 3 months ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆21Updated 2 years ago
- Materials for a Python in HPC class☆34Updated 5 years ago
- a modeling environment tailored to parameter estimation in dynamical systems☆59Updated last week
- A python package for producing publication quality images using matplotlib.☆101Updated 4 years ago
- Cython interface for the GNU Scientific Library (GSL).☆121Updated 3 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 11 months ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated 3 weeks ago
- a collection of modern sparse (regularized) linear regression algorithms.☆64Updated 5 years ago
- Python wrapper around cvodes (from the sundials library)☆35Updated last week
- Simplicial Homology Global Optimization☆52Updated 4 months ago
- Probabilistic Inference on Noisy Time Series☆238Updated 5 months ago
- PyDSTool main development repo☆175Updated 2 years ago
- Rule-based modeling framework☆64Updated 2 months ago
- kramersmoyal: Kramers-Moyal coefficients for stochastic data of any dimension, to any desired order☆75Updated 7 months ago
- Code for the Manifold Boundary Approximation Method☆15Updated 2 years ago
- Python package for stochastic simulations☆18Updated last week
- ABCpy package☆115Updated last year