SystemsBioinformatics / stochpy
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
☆40Updated 2 years ago
Alternatives and similar repositories for stochpy:
Users that are interested in stochpy are comparing it to the libraries listed below
- Python package for stochastic simulations☆17Updated this week
- Toolbox for non-linear calibration modeling.☆24Updated 2 months ago
- Modeling toolkit for biochemical simulation☆73Updated 3 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 3 months ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆67Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- Data-Driven Constraint-based analysis☆12Updated 2 years ago
- StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.☆16Updated 4 years ago
- Implementation of Mapper Algorithm☆14Updated 8 years ago
- Online Principal Component Analysis☆22Updated 2 years ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated last week
- Solve ODEs fast, with support for PyMC☆112Updated 9 months ago
- Code for the Manifold Boundary Approximation Method☆14Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Whole-cell modeling tutorials☆16Updated 4 years ago
- Stochastic Gillespie-type simulations using Julia☆63Updated 6 months ago
- A Julia package to analyze protein sequences, structures, and evolutionary information☆77Updated 3 months ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 10 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 5 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆58Updated 4 years ago
- a modeling environment tailored to parameter estimation in dynamical systems☆58Updated last week
- A framework for connecting scientific models across languages and scales.☆33Updated last week
- Tutorial Notebooks of BioJulia☆31Updated last year
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated last year
- Causal and probabilistic reasoning with continuous time dynamical systems☆17Updated this week
- A package to represent high-order relationships between objects of any type☆34Updated last year
- Modular cloning simulation with the MoClo framework in Python☆12Updated 2 years ago
- Python wrapper around cvodes (from the sundials library)☆34Updated last month
- FM-index for full-text search☆20Updated 3 years ago