Release of the whole cell E. coli model.
☆76Dec 10, 2024Updated last year
Alternatives and similar repositories for WholeCellEcoliRelease
Users that are interested in WholeCellEcoliRelease are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Martini Workshop: Simulating a Minimal Bacterial Cell☆15May 13, 2024Updated last year
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated last month
- Rule-based modeling framework☆67Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 3 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Mar 30, 2026Updated last week
- A modular compiler for biological chemical reaction networks☆51Dec 8, 2025Updated 4 months ago
- Symbolic Kinetic Models with Python☆35Jun 4, 2025Updated 10 months ago
- ☆10Dec 15, 2023Updated 2 years ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated 7 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Python package for creating, calibrating and simulating RBA models☆13Updated this week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated last year
- ☆26Dec 9, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Repository of tutorials for The COBRA Toolbox☆25Mar 16, 2026Updated 3 weeks ago
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- DCell browser and gene deletion simulator☆124Dec 14, 2022Updated 3 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆45Apr 2, 2026Updated last week
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13Updated this week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated this week
- Repository of standardized biological experimental data and metadata☆15Jan 9, 2025Updated last year
- cameo - computer aided metabolic engineering & optimization☆123Nov 7, 2022Updated 3 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Mar 29, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Tool for estimating growth rates from microbial growth curves☆32Feb 4, 2026Updated 2 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆28Nov 7, 2024Updated last year
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆17Mar 12, 2026Updated last month
- ☆15Aug 22, 2022Updated 3 years ago
- Core Interface and Engine for Vivarium 1.0☆35Dec 3, 2024Updated last year
- Biological Pathway Visualization☆11Apr 8, 2021Updated 5 years ago
- Python framework for Systems Biology modeling☆195Mar 30, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Dec 10, 2018Updated 7 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆67May 6, 2025Updated 11 months ago
- Reference-free analysis of genetic architecture☆22Sep 21, 2024Updated last year
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Apr 5, 2026Updated last week
- A Python 3 implementation of Thermodynamics-based Flux Analysis☆45Jul 9, 2025Updated 9 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 2 years ago