Release of the whole cell E. coli model.
☆77Dec 10, 2024Updated last year
Alternatives and similar repositories for WholeCellEcoliRelease
Users that are interested in WholeCellEcoliRelease are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole Cell Model of E. coli☆40Updated this week
- Martini Workshop: Simulating a Minimal Bacterial Cell☆15May 13, 2024Updated last year
- Causal and probabilistic reasoning with continuous time dynamical systems☆20Aug 29, 2025Updated 8 months ago
- Python interface for running COMETS simulations and analyzing the results☆16Feb 24, 2026Updated 2 months ago
- Rule-based modeling framework☆67Apr 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- a python library for working with flow cytometry data.☆14May 11, 2015Updated 10 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆10Apr 28, 2025Updated last year
- Registry of containerized biosimulation tools that support a standard command-line interface☆15Updated this week
- A modular compiler for biological chemical reaction networks☆51Apr 26, 2026Updated last week
- Symbolic Kinetic Models with Python☆36Jun 4, 2025Updated 10 months ago
- ☆10Dec 15, 2023Updated 2 years ago
- ☆24Oct 11, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BRENDA parser in python☆23May 16, 2022Updated 3 years ago
- R CRAN package `diptest` : Hartigan's diptest for unimodality (including p-values)☆11Aug 19, 2025Updated 8 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Metabolic Engineering Workbench☆42Jun 9, 2024Updated last year
- Python package for creating, calibrating and simulating RBA models☆13Apr 8, 2026Updated 3 weeks ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆19May 24, 2024Updated last year
- ☆26Dec 9, 2022Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆25Updated this week
- Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…☆41Jan 30, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13Apr 20, 2026Updated last week
- Repository of standardized biological experimental data and metadata☆15Jan 9, 2025Updated last year
- ☆18Aug 29, 2025Updated 8 months ago
- cameo - computer aided metabolic engineering & optimization☆124Nov 7, 2022Updated 3 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆30Mar 29, 2025Updated last year
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Jun 9, 2017Updated 8 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆29Nov 7, 2024Updated last year
- T5 (Text-to-Text Transformer Model) for Farsi.☆11Aug 13, 2022Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Apr 6, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python Environment for Modeling and Simulating Biological Systems☆137Apr 10, 2026Updated 3 weeks ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Mar 6, 2025Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆17Apr 25, 2026Updated last week
- ☆16Aug 22, 2022Updated 3 years ago
- Biological Pathway Visualization☆11Apr 8, 2021Updated 5 years ago
- Python framework for Systems Biology modeling☆196Mar 30, 2026Updated last month
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆191Jul 4, 2023Updated 2 years ago