CovertLab / WholeCellEcoliReleaseLinks
Release of the whole cell E. coli model.
☆73Updated last year
Alternatives and similar repositories for WholeCellEcoliRelease
Users that are interested in WholeCellEcoliRelease are comparing it to the libraries listed below
Sorting:
- A Python framework for structural systems biology☆110Updated 5 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆60Updated 2 weeks ago
- The BiGG Models website server☆86Updated 6 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆64Updated 7 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated 2 weeks ago
- cameo - computer aided metabolic engineering & optimization☆122Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Toolbox for including enzyme constraints on a genome-scale model.☆79Updated last month
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago
- The generic genome-scale metabolic model of Homo sapiens☆123Updated 3 weeks ago
- nucleic acid folding☆108Updated 4 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆33Updated 3 years ago
- ☆26Updated 3 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago
- The consensus GEM for Saccharomyces cerevisiae☆115Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆13Updated 2 years ago
- Metabolic Engineering Workbench☆41Updated last year
- General low-level API☆50Updated 3 years ago
- Enzyme models that take into account kinetics, allostery and thermodynamics☆27Updated last year
- Whole Cell Model of E. coli☆34Updated 2 weeks ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆59Updated 10 years ago
- Native python implementation of SBOL 3.0 specification☆42Updated 9 months ago
- Enzyme-constrained genome-scale models in python☆30Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- D3.js based visualizations of cobrapy metabolic models☆50Updated 5 years ago
- BRENDA parser in python☆22Updated 3 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆114Updated 2 years ago