An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
☆63Jun 24, 2026Updated 2 months ago
Alternatives and similar repositories for ecell4_base
Users that are interested in ecell4_base are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GTS: Genome Transformation Subprograms☆15Feb 25, 2023Updated 3 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆13Mar 27, 2026Updated 5 months ago
- ☆19May 5, 2021Updated 5 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 5 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Some wrappers for libav☆15Apr 11, 2013Updated 13 years ago
- general purpose coarse-grained molecular dynamics simulation package☆35Jan 27, 2023Updated 3 years ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 5 years ago
- Toolkit for discovering and aggregating data for whole-cell modeling☆16Jan 19, 2022Updated 4 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Jun 21, 2019Updated 7 years ago
- A Python framework for structural systems biology☆109Dec 7, 2020Updated 5 years ago
- ☆15Jun 4, 2014Updated 12 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated 2 years ago
- Plotting mass spectra with Matplotlib☆35Nov 11, 2016Updated 9 years ago
- BSMN common data processing pipeline☆11Jun 6, 2025Updated last year
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 5 months ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆55Apr 28, 2023Updated 3 years ago
- The Swiss Army knife for carbohydrate structure validation, refinement and analysis☆32Jul 14, 2026Updated last month
- Python framework for Systems Biology modeling☆199May 19, 2026Updated 3 months ago
- Datasets for open forcefield parameterization and development☆11Sep 22, 2019Updated 6 years ago
- Pipelines and tools for MRI analysis☆12Jun 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆27Dec 9, 2022Updated 3 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆584Updated this week
- Emap2sec is a computational tool to identify protein secondary structures☆16Jul 31, 2024Updated 2 years ago
- Jupyter lab widget for rendering graphs (networks)☆24Oct 18, 2022Updated 3 years ago
- Repository of tutorials for The COBRA Toolbox☆25Aug 24, 2026Updated last week
- Python library for SBGN☆11May 19, 2026Updated 3 months ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- A R Bioconductor package for accessing MyGene.info services☆12Jun 22, 2018Updated 8 years ago
- Examples for use of YANK - getyank.org☆12Sep 20, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python code for interactive parallel coordinates visualization on jupyter notebook.☆12Sep 8, 2019Updated 6 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- Raspberry pi code for controlling the rapid-deploy critical care ventilator☆15Feb 2, 2022Updated 4 years ago
- Convergent Cross Mapping R package☆14Oct 6, 2013Updated 12 years ago
- ☆17Sep 13, 2024Updated last year