An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
☆62Apr 2, 2026Updated last month
Alternatives and similar repositories for ecell4_base
Users that are interested in ecell4_base are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phen…☆18Apr 6, 2026Updated last month
- Python module to read binary Plink files.☆17Mar 25, 2026Updated last month
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆13Mar 27, 2026Updated last month
- Standard Library Concepts Emulation☆14Feb 8, 2021Updated 5 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- Mycoplasma genitalium whole-cell model☆126Oct 6, 2015Updated 10 years ago
- general purpose coarse-grained molecular dynamics simulation package☆35Jan 27, 2023Updated 3 years ago
- ReFramed: metabolic modeling package☆63May 4, 2026Updated 2 weeks ago
- ☆14May 26, 2020Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Apr 24, 2021Updated 5 years ago
- Toolkit for discovering and aggregating data for whole-cell modeling☆15Jan 19, 2022Updated 4 years ago
- A mdbook backend for generating SATySFi documents.☆19Feb 5, 2023Updated 3 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Jun 21, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mechanical designs for a contactless takeout barrier for sanitary delivery of goods from a store to a guest or delivery person.☆14Mar 25, 2020Updated 6 years ago
- ☆15Jun 4, 2014Updated 11 years ago
- Plotting mass spectra with Matplotlib☆35Nov 11, 2016Updated 9 years ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- BSMN common data processing pipeline☆11Jun 6, 2025Updated 11 months ago
- SNAP repository for Ringo☆14Jul 25, 2017Updated 8 years ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated last month
- The Swiss Army knife for carbohydrate structure validation, refinement and analysis☆29Apr 29, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python framework for Systems Biology modeling☆196Mar 30, 2026Updated last month
- Pipelines and tools for MRI analysis☆12Jun 14, 2023Updated 2 years ago
- Datasets for open forcefield parameterization and development☆11Sep 22, 2019Updated 6 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated last month
- The current web platform for metabolismofcities.org and all its underlying sub-sites.☆10May 6, 2026Updated 2 weeks ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 weeks ago
- Jupyter lab widget for rendering graphs (networks)☆24Oct 18, 2022Updated 3 years ago
- Python library for SBGN☆11May 12, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- Code sharing related to DREAM challenges☆23Feb 21, 2017Updated 9 years ago
- Python code for interactive parallel coordinates visualization on jupyter notebook.☆12Sep 8, 2019Updated 6 years ago
- Examples for use of YANK - getyank.org☆12Sep 20, 2021Updated 4 years ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆17Feb 8, 2019Updated 7 years ago