libRoadRunner: A high-performance SBML simulator
☆62Sep 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for roadrunner
Users that are interested in roadrunner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 5 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 5 years ago
- Bioscrape: Biological Modeling, Simulation, and Parameter Estimation☆30Sep 10, 2026Updated last week
- High-performance sensitivity analysis for large ordinary differential equation models☆144Sep 11, 2026Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python Library to interact with the Cell Collective API v2☆12Dec 8, 2022Updated 3 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Updated this week
- Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++☆21Oct 8, 2024Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- Multi-dimensional, trans-omics metabolic maps.☆56Nov 13, 2025Updated 10 months ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- BRENDA parser in python☆23May 16, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Dec 9, 2022Updated 3 years ago
- PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…☆216Aug 15, 2026Updated last month
- ☆20Jun 20, 2022Updated 4 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Python solution for the application of machine learning to Pop PK model selection.☆32Sep 8, 2026Updated last week
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- A python library for the analysis of chemical reaction networks.☆22Oct 21, 2022Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 8 years ago
- A Python toolbox for COPASI☆13Jun 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (…☆43Sep 7, 2026Updated last week
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Client for the Bioconductor AnnotationHub web resource☆20Jun 30, 2026Updated 2 months ago
- DEFLATE/zlib compression and decompression for Rust.☆13Jan 3, 2025Updated last year
- A python library to conjugate spanish words with parameters tense, mood and pronoun☆16Apr 21, 2025Updated last year
- A Tutorial for Parallelised Scalable Simulations in TensorFlow☆16Jul 27, 2022Updated 4 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Jul 14, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Touch camera for Bevy that supports drag and pinch to zoom☆13Feb 21, 2024Updated 2 years ago
- Codon-Aware Multiple Sequence Alignments☆19Nov 15, 2024Updated last year
- ☆12Jan 27, 2022Updated 4 years ago
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated 7 months ago
- OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.☆42Jul 29, 2025Updated last year
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆70Updated this week
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago