PyBioPAX: A python implementation of the BioPAX object model
☆27May 10, 2024Updated 2 years ago
Alternatives and similar repositories for pybiopax
Users that are interested in pybiopax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Jul 1, 2024Updated 2 years ago
- Semantic prefix map registry☆14Jul 2, 2026Updated 3 weeks ago
- Python library for SBGN☆11May 19, 2026Updated 2 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 4 months ago
- Schema for chemistry ontology classes☆23Jul 18, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Oct 24, 2022Updated 3 years ago
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- RDF Tables in Rust☆17Aug 26, 2022Updated 3 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Jul 7, 2026Updated 3 weeks ago
- PyCTD is a Python software package to query and analyse data from the CTD database☆12Oct 6, 2022Updated 3 years ago
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆12Mar 31, 2026Updated 3 months ago
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…☆10Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Summary Dashboard for Open Biological and Biomedical Ontologies☆24Jun 8, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- 🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings☆15Jul 4, 2026Updated 3 weeks ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆146Updated this week
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance…☆18Feb 14, 2024Updated 2 years ago
- IRI parsing and IRI-URI conversion utilities, aimed at Node.js☆15Aug 31, 2022Updated 3 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28May 17, 2022Updated 4 years ago
- Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species☆14May 19, 2026Updated 2 months ago
- The javascript implementation of the MMTF format.☆11Jun 26, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Ontology for Modeling and Representation of Social Entities☆21Jul 11, 2026Updated 2 weeks ago
- The official PySCeS project source code repository.☆41Mar 20, 2026Updated 4 months ago
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated last month
- Draft cell type definitions from data - candidates for inclusion in CL☆12Jul 8, 2025Updated last year
- Python parser for UCUM (Unified Code for Units of Measure) incl. converter to pint units☆15Jul 17, 2026Updated last week
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- Faultless AST for Open Biomedical Ontologies in Python.☆33Feb 2, 2026Updated 5 months ago
- Simple rust implementation of semantic similarity☆16Feb 20, 2026Updated 5 months ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆19Feb 24, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆64Jul 16, 2026Updated last week
- JSON-LD Contexts for Bioinformatics Data☆24Mar 25, 2024Updated 2 years ago
- Extract the Ensembl genes catalog to simple tables☆18Dec 22, 2025Updated 7 months ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆33Dec 16, 2019Updated 6 years ago
- Monarch agent tutorial☆15Apr 15, 2025Updated last year
- ☆19Jul 29, 2024Updated 2 years ago
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.☆14Jun 23, 2026Updated last month