gyorilab / pybiopax
PyBioPAX: A python implementation of the BioPAX object model
โ24Updated 10 months ago
Alternatives and similar repositories for pybiopax:
Users that are interested in pybiopax are comparing it to the libraries listed below
- ๐ช What's the latest version for each database?โ27Updated this week
- Draft cell type definitions from data - candidates for inclusion in CLโ12Updated 2 months ago
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ51Updated last month
- Faultless AST for Open Biomedical Ontologies in Python.โ28Updated this week
- โ20Updated 4 months ago
- ๐๏ธโ๐จ๏ธ Scientists often do the same bad stuff. Automate giving feedback during peer review.โ27Updated 5 months ago
- Ten quick tips to finish that manuscript that's 90% complete.โ13Updated 2 years ago
- Connect the dots in networks.โ18Updated 4 years ago
- A stitching platform for InXightโ16Updated 4 months ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.โ28Updated last year
- Ontology cross-reference and mapping serviceโ18Updated 8 months ago
- Interpretable genotype-phenotype landscape modelingโ35Updated last year
- Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on โsmallโ chemical compoโฆโ46Updated 2 years ago
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ121Updated this week
- Harmonizing pathway databases using Biological Expression Language (BEL)โ19Updated 8 months ago
- Project code for BioHackathon Europe 2023.โ18Updated 6 months ago
- ๐ A Python package for using ontologies, terminologies, and biomedical nomenclaturesโ62Updated this week
- Methods for mapping genomic data onto 3D protein structure.โ28Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)โ21Updated last month
- Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.โ13Updated last month
- The Complete Python Antibody Libraryโ21Updated 7 months ago
- Python package to query and analyse UniProtโ25Updated 4 years ago
- โ12Updated this week
- ๐ Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.โ42Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)โ21Updated 3 years ago
- โ24Updated 4 years ago
- LLM-based gene function enrichment toolโ10Updated 3 weeks ago
- BRENDA parser in pythonโ21Updated 2 years ago
- MOLeculAR structure annoTatorโ34Updated 5 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.โ58Updated last year