Alternatives and similar repositories for CellModeller

Users that are interested in CellModeller are comparing it to the libraries listed below

• MathCancer / PhysiCell
  PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch.…
  ☆176Updated 8 months ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 4 months ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆115Updated 2 weeks ago
• juliendelile / MECAGEN
  Simulation platform of animal embryogenesis
  ☆20Updated 3 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 2 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆186Updated 2 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆27Updated this week
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆74Updated 2 weeks ago
• Chaste / Chaste
  Chaste - Cancer Heart And Soft Tissue Environment - main public repository.
  ☆139Updated this week
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆23Updated 2 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆33Updated 2 years ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆29Updated this week
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆71Updated 9 months ago
• virtualcell / vcell
  Virtual Cell Framework
  ☆94Updated this week
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆52Updated this week
• SBRG / MASSpy
  ☆25Updated 2 years ago
• kreft / iDynoMiCS
  Individual-based Dynamics of Microbial Communities Simulator
  ☆18Updated 3 years ago
• ingewortel / artistoo
  CPM implementation in pure JavaScript
  ☆36Updated last week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆100Updated 2 years ago
• Emergent-Behaviors-in-Biology / community-simulator
  Simulate microbial community batch culture experiments.
  ☆42Updated 11 months ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated this week
• MathOnco / HAL
  HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs
  ☆36Updated last year
• gchure / reproducible_research
  A template repository for how I structure my scientific research
  ☆99Updated last year
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆32Updated 4 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆58Updated this week
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆79Updated 8 months ago