RECOVERcoalition / RecoverLinks
Exploring the space of drug combinations to discover synergistic drugs using Active Learning
☆24Updated last year
Alternatives and similar repositories for Recover
Users that are interested in Recover are comparing it to the libraries listed below
Sorting:
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆40Updated 2 years ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated 2 years ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆96Updated 3 years ago
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆58Updated 2 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.☆24Updated 3 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆41Updated last year
- Code for the paper LaM-SLidE - Latent Space Modeling of Spatial Dynamical Systems via Linked Entities☆25Updated 5 months ago
- A fully differentiable set autoencoder☆16Updated last year
- DPPIN: A Biological Repository of Dynamic Protein-Protein Interaction Network Data, IEEE BigData 2022☆30Updated 2 years ago
- A Modular Architecture for Deep Learning Systems☆45Updated 5 months ago
- ☆52Updated 4 months ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆38Updated 11 months ago
- ☆29Updated 3 years ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆64Updated 5 years ago
- Differentiable Euler Characteristic Transform☆17Updated last year
- LC-PLM: long-context protein language model based on BiMamba-S architecture☆21Updated 9 months ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated 2 years ago
- ☆81Updated 2 years ago
- Approximate subgraph motif mining through learnable edge contraction.☆13Updated 2 years ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆89Updated 3 weeks ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆75Updated 4 years ago
- ☆26Updated 3 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆85Updated 3 years ago
- ☆15Updated 4 months ago