A VGAE-based model to infer transcription factor regulatory network
☆29Jul 25, 2022Updated 4 years ago
Alternatives and similar repositories for DeepTFni
Users that are interested in DeepTFni are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep model infers gene regulation networks from scRNA-seq data.☆13Sep 3, 2026Updated last month
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated last month
- ☆89Jun 24, 2023Updated 3 years ago
- ☆15Nov 5, 2025Updated 11 months ago
- ☆10Oct 14, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆10Jul 3, 2018Updated 8 years ago
- ☆30Apr 11, 2023Updated 3 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Code repository for PEAS (Predict Enhancers from ATAC-seq), including feature extraction files and easy to use python script for training…☆11Jan 21, 2021Updated 5 years ago
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆18Oct 20, 2023Updated 3 years ago
- ☆32May 11, 2026Updated 5 months ago
- 16S RNA microbiome pipeline☆14Jun 2, 2022Updated 4 years ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17May 26, 2026Updated 5 months ago
- ☆19Dec 1, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13May 12, 2023Updated 3 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆70Nov 10, 2023Updated 2 years ago
- Code to reproduce analyses in Kim et al. 2025☆10Dec 17, 2025Updated 10 months ago
- PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer…☆14Dec 4, 2024Updated last year
- ☆15Aug 9, 2023Updated 3 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆483Feb 9, 2026Updated 8 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆78Feb 24, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 2 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆67Oct 16, 2024Updated 2 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 9 years ago
- GWAS genetics Fine-mapping method☆29Jun 11, 2026Updated 4 months ago
- HiCSR: a Hi-C super-resolution framework for producing highly realistic contact maps☆15Nov 22, 2022Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- Agentic Shell (agish) is an experimental shell where commands are generated from english text☆14Jan 11, 2025Updated last year
- A Python wrapper for alvaDesc software☆10Oct 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Mar 17, 2021Updated 5 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 3 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- ☆12May 16, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago
- Deep learning for single-cell Gene Regulatory Networks☆15Oct 13, 2026Updated 2 weeks ago
- Phenotype Aware Components Analysis is a contrastive learning approach leveraging CCA to robustly capture weak sources of subphenotypic v…☆11Oct 21, 2025Updated last year