Alternatives and similar repositories for DeepTFni

Users that are interested in DeepTFni are comparing it to the libraries listed below

• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 10 months ago
• HantaoShu / DeepSEM
  ☆87Updated 2 years ago
• zpliulab / GENELink
  ☆35Updated 3 years ago
• zhanglab-wbgcas / STGRNS
  ☆30Updated 2 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆58Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆58Updated 5 months ago
• lanagarmire / Asgard
  ☆44Updated last year
• melobio / Concerto-reproducibility
  ☆40Updated 2 years ago
• yjgeno / GenKI
  ☆21Updated last year
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆106Updated 2 years ago
• TencentAILabHealthcare / scTranslator
  ☆73Updated 4 months ago
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• Durenlab / LINGER
  ☆121Updated 6 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆65Updated last year
• madilabcode / scNET
  ☆59Updated this week
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆73Updated 3 years ago
• altoslabs / perturbench
  ☆69Updated 2 months ago
• jsxlei / SCALE
  Single-cell ATAC-seq analysis via Latent feature Extraction
  ☆103Updated 2 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 3 years ago
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• theislab / scgen-reproducibility
  ☆33Updated 5 years ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆92Updated last month
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• HelloWorldLTY / UKBioLM
  ☆22Updated 8 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆61Updated 3 weeks ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 3 months ago