dchary / ucdeconvolveLinks
UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
☆26Updated 2 years ago
Alternatives and similar repositories for ucdeconvolve
Users that are interested in ucdeconvolve are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- ☆31Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆78Updated 2 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆62Updated 3 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Code used to benchmark Xenium☆66Updated last year
- ☆31Updated 6 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆43Updated 7 months ago
- ☆30Updated 4 months ago
- ☆18Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆57Updated 3 weeks ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 weeks ago
- ☆56Updated 2 weeks ago
- An R package for handling and analysing imaging mass cytometry data☆27Updated 2 months ago
- ☆20Updated 10 months ago
- ☆125Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆50Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- ☆14Updated 3 months ago
- ☆40Updated 2 years ago