dchary / ucdeconvolveLinks
UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
☆27Updated 2 years ago
Alternatives and similar repositories for ucdeconvolve
Users that are interested in ucdeconvolve are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- ☆34Updated 3 months ago
- ☆33Updated 11 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- ☆30Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- ☆23Updated 2 weeks ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 8 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆72Updated 7 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- ☆62Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated 3 weeks ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Profile purification of single-cell spatial transcriptomics data☆28Updated 2 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆36Updated 9 months ago
- ☆24Updated last year
- An R package for handling and analysing imaging mass cytometry data☆30Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- List of Spatial Transcriptomics related Tools organized per category☆104Updated last week
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆46Updated last year